Locus 8219

Sequence ID 3R_DroMel_CAF1
Location 22,054,029 – 22,054,125
Length 96
Max. P 0.986345
window13231

overview

Window 1

Location 22,054,029 – 22,054,125
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 94.26
Mean single sequence MFE -27.00
Consensus MFE -23.80
Energy contribution -24.44
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.84
Structure conservation index 0.88
SVM decision value 2.04
SVM RNA-class probability 0.986345
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22054029 96 + 27905053
UGGGUUUUAGUUAAAUGUAAAAGUUCGGGCAUGUUGCCAUA----UGAUCGAUGGCUGGUGGACGUUGAUCGAGCUCCACAUUGAUAAGACUUUGUGUUA
.((((((((....(((((...(((((.(((.....)))...----.((((((((.........)))))))))))))..)))))..))))))))....... ( -27.80)
>DroSec_CAF1 46148 96 + 1
UGGGUUUUAGUUAAAUGUAAAAGUUCGGGCAUGUUGCCAUA----UGAUCGAUGGCUGGUGGACGUUGAUCGAGCUCCACAUUGAUAAGACUUUGUGUUG
.((((((((....(((((...(((((.(((.....)))...----.((((((((.........)))))))))))))..)))))..))))))))....... ( -27.80)
>DroSim_CAF1 38777 96 + 1
UGGGUUUUAGUUAAAUGUAAAAGUUCGGGCAUGUUGCCAUA----UGAUCGAUGGCUGGUGGACGUUGAUCGAGCUCCACAUUGAUAAGACUUUGUGUUG
.((((((((....(((((...(((((.(((.....)))...----.((((((((.........)))))))))))))..)))))..))))))))....... ( -27.80)
>DroEre_CAF1 40552 99 + 1
UGGGU-UGAGUUAAAUGUAAAAGUUCGGGAAUGGUGCUAUAUGUAUGAUCGAUGGCUGGUGGACGUUGAUCGAGCUCCACAUUGAUAAGACUUUGUGUUA
.((((-(..(((((.(((...(((((.......((((.....))))((((((((.........)))))))))))))..))))))))..)))))....... ( -22.70)
>DroYak_CAF1 48282 96 + 1
UGGGUUUUAGUUAAAUGUAAAAGUUCGGGAACGUGGCCAUA----UGAUCGAUGGCUGGUGGACGUUGAUCGAGCUCUACAUUGAUAAGACUUUGUGUUA
.((((((((....((((((..(((((((.(((((((((((.----......)))))).....)))))..))))))).))))))..))))))))....... ( -28.90)
>consensus
UGGGUUUUAGUUAAAUGUAAAAGUUCGGGCAUGUUGCCAUA____UGAUCGAUGGCUGGUGGACGUUGAUCGAGCUCCACAUUGAUAAGACUUUGUGUUA
.((((((((....(((((...(((((.(((.....)))........((((((((.........)))))))))))))..)))))..))))))))....... (-23.80 = -24.44 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:40 2006