Locus 8218

Sequence ID 3R_DroMel_CAF1
Location 22,053,844 – 22,053,956
Length 112
Max. P 0.817922
window13230

overview

Window 0

Location 22,053,844 – 22,053,956
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 87.36
Mean single sequence MFE -33.15
Consensus MFE -27.50
Energy contribution -26.45
Covariance contribution -1.05
Combinations/Pair 1.29
Mean z-score -2.23
Structure conservation index 0.83
SVM decision value 0.67
SVM RNA-class probability 0.817922
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22053844 112 - 27905053
UUACUUUG-GGCCGAUCUAAAGAUCUCUCUGUGGAC----AUUAUCUAUGGCAUUUUAAAGUGUGAAAGCGAUCUUUUAGCGGCAUUUUAGGGGUGUGAAU---UUAACGCUCGUUUAAA
...((...-.((((....(((((((...(((((((.----....)))))))...........((....)))))))))...)))).....))((((((....---...))))))....... ( -28.30)
>DroPse_CAF1 113089 119 - 1
UUGCUUUA-GGUUCAGUGAAAGAUCUCUCCGUAGAUACCUAUUAUCUACGGCACUUUAAAGUGUGAGAGCGAUCUUUUAGCGGCAUUUUAGGGGUGUGAAUUGUUUCACACUCGUUUCAA
.((((...-.((....(((((((((.(((((((((((.....))))))))(((((....)))))..))).)))))))))))))))......(((((((((....)))))))))....... ( -40.60)
>DroSec_CAF1 45963 112 - 1
UUACUUUG-GGCCGAUCUAGAGAUCUCUCUCUGGAC----AUUAUCUAUGGCAUUUUAAAGUGUGAAAGCGAUCUUUUAGCGGCAUUUUAGGGGUGUGAAU---UUAACGCUCGUUUUAA
...((...-.((((....(((((((.((.((((((.----....))))..(((((....))))))).)).)))))))...)))).....))((((((....---...))))))....... ( -27.90)
>DroEre_CAF1 40372 112 - 1
UUGCUUUG-GGCCGAUCUAAAGAUCUCUCUGUGGAC----AUUAUCUAUGGCAUUUUAAAGUGCGAAAGCGAUCUUUUAGCGGCAUUUGAGGGGUGUGAAU---UUAACGCUCGUUUUAA
...(((..-.((((....(((((((...(((((((.----....)))))))...........((....)))))))))...))))....)))((((((....---...))))))....... ( -32.80)
>DroYak_CAF1 48094 113 - 1
UUACUUUGGGGCCGAUCUAAAGAUCUCUCUGUGGAC----AUUAUCUAUGGCAUUUUAAAGUGUGAAAGCGAUCUUUUAGCGGCAUUUUAGGGGUGUGAAU---UUAACGCUCGUUUUAA
...((.....((((....(((((((...(((((((.----....)))))))...........((....)))))))))...)))).....))((((((....---...))))))....... ( -28.70)
>DroPer_CAF1 132403 119 - 1
UUGCUUUA-GGUUCAGUGAAAGAUCUCUCCGUAGAUACCUAUUAUCUACGGCACUUUAAAGUGUGAGAGCGAUCUUUUAGCGGCAUUUUAGGGGUGUGAAUUGUUUCACACUCGUUUCAA
.((((...-.((....(((((((((.(((((((((((.....))))))))(((((....)))))..))).)))))))))))))))......(((((((((....)))))))))....... ( -40.60)
>consensus
UUACUUUG_GGCCGAUCUAAAGAUCUCUCUGUGGAC____AUUAUCUAUGGCAUUUUAAAGUGUGAAAGCGAUCUUUUAGCGGCAUUUUAGGGGUGUGAAU___UUAACGCUCGUUUUAA
...((.....((((....(((((((...(((((((.........)))))))...........((....)))))))))...)))).....))((((((..........))))))....... (-27.50 = -26.45 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:39 2006