Locus 8217

Sequence ID 3R_DroMel_CAF1
Location 22,053,707 – 22,053,814
Length 107
Max. P 0.907380
window13229

overview

Window 9

Location 22,053,707 – 22,053,814
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 88.71
Mean single sequence MFE -16.72
Consensus MFE -14.28
Energy contribution -15.04
Covariance contribution 0.76
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.85
SVM decision value 1.05
SVM RNA-class probability 0.907380
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22053707 107 + 27905053
UCCACUAUCAAUAAGUAAUCAAAGCCACACUUCCUUCCUUAGAUAAUAGUCUGGAAAAUGGAAGCUCCGCCUUGAUUUAAUUUGAAUUCGCUUCACCCUCACCCCAC
.......((((.....((((((.((....(((((((((..((((....))))))))...)))))....)).))))))....))))...................... ( -19.60)
>DroSec_CAF1 45826 107 + 1
UCCACUAUCAAUAAGUAAUCAAAGCCACACUUCCUUCCUUAGAUAAUAGUCUGGCAAAUGGAAGCUCCGCCUUGAUUUAAUUUGAGUUCACUUCACCCUCACCCCGC
.......((((.....((((((.((....(((((((..((((((....))))))..)).)))))....)).))))))....))))...................... ( -18.70)
>DroSim_CAF1 38455 107 + 1
UCCACUAUCAAUAAGUAAUCAAAGCCACACUUCCUUCCUUAGAUAAUAGUCUGGCAAAUGGAAGCUCCGCCUUGAUUUAAUUUGAGUUCACUUCACCCUCACCCCAC
.......((((.....((((((.((....(((((((..((((((....))))))..)).)))))....)).))))))....))))...................... ( -18.70)
>DroEre_CAF1 40237 100 + 1
UCCACUAUCAAUAAAUAAUCAAAGCCGCACUUCCUUCCUUAGAUAACAGUCUGGAAAAUGAGAGCUCCGCCCAGAUUCAAUUUGAAUUCACAUCACC-GCA------
.......((((.....((((...((.((.(((..((((..((((....))))))))...))).))...))...))))....))))............-...------ ( -12.30)
>DroYak_CAF1 47965 99 + 1
UCCACUAUCAAUAAAUAAUCAAAGCCACACUUCCUUCCUUAGAUAACAGUCUGGAAAAUGAGAGCUUCGCCUUGAUUUAAUUUG-AUUCACAUCACC-GCA------
......(((((.....((((((.((....((..(((((..((((....))))))))...)..))....)).))))))....)))-))..........-...------ ( -14.30)
>consensus
UCCACUAUCAAUAAGUAAUCAAAGCCACACUUCCUUCCUUAGAUAAUAGUCUGGAAAAUGGAAGCUCCGCCUUGAUUUAAUUUGAAUUCACUUCACCCUCACCCC_C
.......((((.....((((((.((....(((((....((((((....)))))).....)))))....)).))))))....))))...................... (-14.28 = -15.04 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:38 2006