Locus 8215

Sequence ID 3R_DroMel_CAF1
Location 22,049,333 – 22,049,427
Length 94
Max. P 0.679646
window13226

overview

Window 6

Location 22,049,333 – 22,049,427
Length 94
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 85.97
Mean single sequence MFE -30.54
Consensus MFE -18.82
Energy contribution -19.90
Covariance contribution 1.08
Combinations/Pair 1.14
Mean z-score -2.47
Structure conservation index 0.62
SVM decision value 0.30
SVM RNA-class probability 0.679646
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22049333 94 - 27905053
CAAUUCUUUUCGAAGGCGAGGUCGCCAUUGAGAAUGAGGCCUACGUUGUUUUCCCUCGUUCUGACAUGG-CCUUUUCCCAUGCGAAGAGGGAAAU
...(((((((((..((.((((..((((((.(((((((((..............))))))))).).))))-)..))))))...))))))))).... ( -33.54)
>DroSec_CAF1 41488 73 - 1
CAAUUC--------------------AUUGAGAAUGAGGCCUACGUUGUUUUCCCUCGUUCUGACAUGG-CCUUUUC-CAUGAGGAGAGGGAAAU
....((--------------------(((.(((((((((..............))))))))).).))))-(((((((-(....)))))))).... ( -23.04)
>DroSim_CAF1 34060 94 - 1
CAAUUCUUUUCGAAGGCGAGGUCGCCAUUGAGAAUGAGGCCUACGUUGUUUUCCCUCGUUCUGACAUGG-CCUUUUCCCAUGAGGAGAGGGAAAU
...((((((((((.((((....)))).))))))).)))...........((((((((.((((..(((((-.......))))))))))))))))). ( -33.20)
>DroEre_CAF1 35780 93 - 1
CAAUUCUUUUCGAAGGCGAGGUCGCCAUUGAGAAUGAGGCCUACGUUGUUUUUCCUCGUUUUGACAUGG-CAUUUUC-CCAGCGGAGAGAGAAAU
...(((((((((..((.((((..((((((.(((((((((...((...))....))))))))).).))))-)..))))-))..))))))))).... ( -32.00)
>DroYak_CAF1 43448 94 - 1
CAAUUCUUUUCGAAGGCGAGGUCGCCAUUGAGAAUGAGGCCUACGUUGUUUUCCCUCGUUUUGACAUGGCCAUUUUC-CCAGCGGAGAGGGAAAU
...(((((((((..((.(((((.((((((.(((((((((..............))))))))).).))))).))))).-))..))))))))).... ( -30.94)
>consensus
CAAUUCUUUUCGAAGGCGAGGUCGCCAUUGAGAAUGAGGCCUACGUUGUUUUCCCUCGUUCUGACAUGG_CCUUUUC_CAUGCGGAGAGGGAAAU
...(((((((((..((((....))))....(((((((((..............)))))))))....................))))))))).... (-18.82 = -19.90 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:35 2006