Locus 8214

Sequence ID 3R_DroMel_CAF1
Location 22,047,837 – 22,047,932
Length 95
Max. P 0.983491
window13225

overview

Window 5

Location 22,047,837 – 22,047,932
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 95.82
Mean single sequence MFE -17.84
Consensus MFE -17.40
Energy contribution -17.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.98
SVM decision value 1.95
SVM RNA-class probability 0.983491
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22047837 95 + 27905053
CCAAUAAAACUAAACGGUUCGGUUAGCCGAACACACUCGUUAAUGUAAAUGAGUUUUAAUUAAGAAAAGACCAAACUGCCAAUCCAUGGACACUG-
(((.............((((((....))))))..(((((((......)))))))................................)))......- ( -17.40)
>DroSec_CAF1 39989 95 + 1
CCAAUAAAACUAAACGGUUCGGUUAGCCGAACACACUCGUUAAUGUAAAUGAGUUUUAAUUAAGAAAAGACCAAACUGCCAAUCCAUGGACGCUA-
(((.............((((((....))))))..(((((((......)))))))................................)))......- ( -17.40)
>DroSim_CAF1 32555 95 + 1
CCAAUAAAACUAAACGGUUCGGUUAGCCGAACACACUCGUUAAUGUAAAUGAGUUUUAAUUAAGAAAAGACCAAACUGCCAAUCCAUGGACACUA-
(((.............((((((....))))))..(((((((......)))))))................................)))......- ( -17.40)
>DroEre_CAF1 34297 96 + 1
CCAAUAAAACUAAACGGUUCGGUUAGCCGAACACACUCGUUAAUGUAAAUGAGUUUUAAUUAAGAAAAGACCGCACUGCCAAUCCAUGGACACUUA
(((.............((((((....))))))..(((((((......)))))))................................)))....... ( -17.40)
>DroYak_CAF1 41933 96 + 1
CCAAUAAAACUAAACUGUUCGGUUAGCCGAACACACUCGUUAAUGUAAAUGAGUUUUAAUUAAGAAAAGACCACGCUGUCAAUCCAUGGACACUUA
(((.((((((.....(((((((....)))))))...(((((......)))))))))))..........(((......)))......)))....... ( -19.60)
>consensus
CCAAUAAAACUAAACGGUUCGGUUAGCCGAACACACUCGUUAAUGUAAAUGAGUUUUAAUUAAGAAAAGACCAAACUGCCAAUCCAUGGACACUA_
(((.............((((((....))))))..(((((((......)))))))................................)))....... (-17.40 = -17.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:34 2006