Locus 8213

Sequence ID 3R_DroMel_CAF1
Location 22,041,403 – 22,041,507
Length 104
Max. P 0.989407
window13224

overview

Window 4

Location 22,041,403 – 22,041,507
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 95.58
Mean single sequence MFE -24.44
Consensus MFE -24.92
Energy contribution -24.44
Covariance contribution -0.48
Combinations/Pair 1.14
Mean z-score -1.50
Structure conservation index 1.02
SVM decision value 2.16
SVM RNA-class probability 0.989407
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22041403 104 + 27905053
UCGAGAGGGCAGCUAUUAAUAGCUGAGGUAAAACCGCCAAGAGGUCGCACCAACUGCAGGCGGAGCAAUUAUAAAAUCAUAAAAUAUAGACAUACUUUUUGUUA
.(((((((.((((((....))))))........(((((..(....)(((.....))).)))))...............................)))))))... ( -24.00)
>DroSec_CAF1 39479 104 + 1
UCGAGAGGGCAGCUAUUAAUAGCUGAGGUAAAACCGCCAAGAGGUCGCACCAACUGCAGGCGGAGCAAUUAUAAAAUCAUAAAGUAUAGACAUACCUUUUGUUA
.(((((((.((((((....))))))........(((((..(....)(((.....))).)))))...............................)))))))... ( -26.70)
>DroSim_CAF1 31996 104 + 1
UCAAGAGGGCAGCUAUUAAUAGCUGAGGUAAAACCGCCAAGAGGUCGCACCAACUGCAGGCGGAGCAAUUAUAAAAUCAUAAAAUAUAGACAUACUUUUUGUUA
.(((((((.((((((....))))))........(((((..(....)(((.....))).)))))...............................)))))))... ( -24.30)
>DroEre_CAF1 33755 104 + 1
UCGAGAGGGCAGCUAUUAAUAGCUGAAGUAAAACCGCCAAGAGGUCGCACCAACUGCAGGCGGAGCAAUUAUAAAGUCAUAAAAUAUAGCCAUACUUUUUGUUA
.(((((((.((((((....))))))........(((((..(....)(((.....))).)))))...............................)))))))... ( -24.00)
>DroYak_CAF1 41434 104 + 1
UCGAAAGGGCAGCUAUUAAUAGCUGAAGUAAAACCGCCAAGAGGUCGCACCAACUGCAGGCGGCUCAAUUAUAAAAUCGUAAAAUAUAGACAUACUUUUUGUUU
.(((((((.((((((....))))))........(((((..(....)(((.....))).)))))...............................)))))))... ( -23.20)
>consensus
UCGAGAGGGCAGCUAUUAAUAGCUGAGGUAAAACCGCCAAGAGGUCGCACCAACUGCAGGCGGAGCAAUUAUAAAAUCAUAAAAUAUAGACAUACUUUUUGUUA
.(((((((.((((((....))))))........(((((..(....)(((.....))).)))))...............................)))))))... (-24.92 = -24.44 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:33 2006