| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,031,648 – 22,031,743 |
| Length | 95 |
| Max. P | 0.987742 |
| Location | 22,031,648 – 22,031,743 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 94.53 |
| Mean single sequence MFE | -22.74 |
| Consensus MFE | -20.20 |
| Energy contribution | -20.60 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.89 |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.987742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22031648 95 - 27905053 AAAAUAAUUAAAUGGGCUAUGUGUUGUAUAUCUGACAUGUGAUUAUUGUGGCCGCGGUUUGUUAUUAUGGUGGCUAUAUAACCAAUAUUAGCGAU ...............((((.((((((...(((........)))...(((((((((.((........)).)))))))))....))))))))))... ( -22.10) >DroSec_CAF1 29954 95 - 1 AAAAUAAUUAAAUGGGCUAUGUGUUGUAUAUCUGACAUGUGAUUAUUGUGGCCGCGGUUUGUUAUUAUGGUGGCUAUAUAUCCAAUAUUAGCGAU ...............((((.((((((.(((((........))....(((((((((.((........)).)))))))))))).))))))))))... ( -22.40) >DroSim_CAF1 22164 95 - 1 AAAAUAAUUAAAUGGGCUAUGUGUUGUAUAUCUGACAUGUGAUUAUUGUGGCCGCGGUUUGUUAUUAUGGUGGCUAUAUAACCAAUAUUAGCGAU ...............((((.((((((...(((........)))...(((((((((.((........)).)))))))))....))))))))))... ( -22.10) >DroEre_CAF1 23881 90 - 1 UAGAUA-----AUGGGCUAUGUGUUGUAUAUCGGACAUGUGAUUAUUGUGACCGCGGUUUGUUAUUAUGGUGGCAAUAUAACCAAUAUUAGCGAU ..((((-----.(((..((((((((........))))))))..((((((.((((..((.....))..)))).))))))...))).))))...... ( -21.70) >DroYak_CAF1 31500 95 - 1 AAGUUAAUUAAAUGGGCUAUGUGUUGUAUAUCGGACAUGUGAUUAUUGUGGCCGCGGUUUGUUAUUAUGGUGGCUAUAUAACCAAUAUUAGCGAU ..((((((....(((..((((((((........)))))))).....(((((((((.((........)).)))))))))...)))..))))))... ( -25.40) >consensus AAAAUAAUUAAAUGGGCUAUGUGUUGUAUAUCUGACAUGUGAUUAUUGUGGCCGCGGUUUGUUAUUAUGGUGGCUAUAUAACCAAUAUUAGCGAU ...............((((.(((((((((((.....))))).....(((((((((.((........)).)))))))))....))))))))))... (-20.20 = -20.60 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:12 2006