Locus 8204

Sequence ID 3R_DroMel_CAF1
Location 22,031,468 – 22,031,579
Length 111
Max. P 0.796464
window13200

overview

Window 0

Location 22,031,468 – 22,031,579
Length 111
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 92.19
Mean single sequence MFE -21.26
Consensus MFE -17.76
Energy contribution -18.28
Covariance contribution 0.52
Combinations/Pair 1.12
Mean z-score -1.50
Structure conservation index 0.84
SVM decision value 0.60
SVM RNA-class probability 0.796464
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22031468 111 + 27905053
GCAAAGCACAAAAAAUGCCGCCAUAUUUUUCACACCAA-CAGUGACGACAGAAAGCACAGAGAGAGUAACUCAAAAUGUGGCAACAUGCGUAGUAACAACAAUCGAAAUGCU
(((..(((.......))).((((((((((((((.....-..))))................(((.....)))))))))))))....)))....................... ( -20.60)
>DroSec_CAF1 29777 108 + 1
GCAAGGCAUAUAAAAUGCCGCCAUAUUUUUCAC---AA-CAGUGACGACAAAAUGCACAGAGAGAGUAACUCAAAAUGUGGCAACAUGCGUAGUAACAACAAUUGAAAUGCU
(((.(((((.....)))))((((((((((((((---..-..))))................(((.....)))))))))))))....)))....................... ( -26.90)
>DroSim_CAF1 21984 111 + 1
GCAAAGCAUAUAAAAUGCCGCCAUAUUUUUCACACCAA-CAGUGACGACAAAAUGCACAGAGAGAGUAACUCAAAAUGUGGCAACAUGCGUAGUAACAACAAUCGAAAUGCU
(((..((((.....)))).((((((((((((((.....-..))))................(((.....)))))))))))))....)))....................... ( -22.40)
>DroEre_CAF1 23701 111 + 1
GCGAACCACAUAAAAUGCCGCCAUAUUUUUCACAGCAG-CAGUGACGACAAAAGGCACAGAGAGAGUAACUCAAAAUGCGGCAACAUGCGUAGUAACAACAAUCAAAAUGCU
(((............((((((........((((.....-..))))................(((.....))).....))))))......((....))...........))). ( -16.90)
>DroYak_CAF1 31319 112 + 1
GCAAACCAUAAAAAAUGCCGCCAUAUUUUUUGCACCAACCAGUGACGACAAAAAGCACAGAGAGAGUAACUCAAAAUGUGGCAACAUGCGUAGUAACAACAAUCAAAACGCU
..............(((..((((((((((((((((......))).))).............(((.....)))))))))))))..)))((((................)))). ( -19.49)
>consensus
GCAAAGCAUAUAAAAUGCCGCCAUAUUUUUCACACCAA_CAGUGACGACAAAAAGCACAGAGAGAGUAACUCAAAAUGUGGCAACAUGCGUAGUAACAACAAUCGAAAUGCU
(((..((((.....)))).((((((((((((((........))))................(((.....)))))))))))))....)))....................... (-17.76 = -18.28 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:11 2006