Locus 8202

Sequence ID 3R_DroMel_CAF1
Location 22,030,320 – 22,030,424
Length 104
Max. P 0.606433
window13197

overview

Window 7

Location 22,030,320 – 22,030,424
Length 104
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 90.19
Mean single sequence MFE -23.19
Consensus MFE -18.85
Energy contribution -19.21
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.41
Structure conservation index 0.81
SVM decision value 0.15
SVM RNA-class probability 0.606433
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22030320 104 + 27905053
GCAUUCUUUGUUUGCCCCCGAGCUUCGUUUGACAUUUGUCAUCGGCGGCUCCAGACAA--ACACAUAUUCACACGGAGAAA-AAAUCAUAGCUAUAUGCACAAAUAG--
((((..((((((((.....((((((((..((((....)))).))).))))))))))))--)......(((.......))).-.............))))........-- ( -20.70)
>DroSec_CAF1 28621 104 + 1
GCAUUCUUUGUUUGCCCCCGAGCUUCGUUUGACAUUUGUCAUCGACGGCUCCAGACAA--CCACAUAGUCACACGGAGAAA-AAAUCAUUACUAUAUGCACAAACAG--
((((...(((((((.....((((((((..((((....)))).))).))))))))))))--....(((((......((....-...))...)))))))))........-- ( -22.70)
>DroSim_CAF1 20827 104 + 1
GCAUUCUUUGUUUGCCCUCGAGCUUCGUUUGACAUUUGUCAUCGACGGCUCCAGACAA--CCACAUAGUCACACGGAGAAA-AAAUCAUUACUAUAUGCACAAACAG--
((((...(((((((.....((((((((..((((....)))).))).))))))))))))--....(((((......((....-...))...)))))))))........-- ( -22.70)
>DroEre_CAF1 22564 97 + 1
GCAUUCUUUGUUUGCCC-CGAGCUUCGUUUGACAUUUGUCAUCGACGGCUCCAGACAA--ACACAUAGUCACACGGAGAAA-AAAGCAUAACUAUAUGCAC--------
...((((((((......-.((((((((..((((....)))).))).)))))..(((..--.......)))..)))))))).-...(((((....)))))..-------- ( -26.40)
>DroYak_CAF1 30163 109 + 1
GCAUUCUUUGUUUGCCCUCGAGCUUCGUUUGACAUUUGUCAUCAGCGGCUCCAGACAAAAAUACAUAGUAACACGGAGAAAAAAAGCAUAACGAUAUGCACAAAUAGUA
...((((((((((((.((.(((((.(...((((....))))...).))))).)).............)))).)))))))).....(((((....))))).......... ( -23.44)
>consensus
GCAUUCUUUGUUUGCCCCCGAGCUUCGUUUGACAUUUGUCAUCGACGGCUCCAGACAA__ACACAUAGUCACACGGAGAAA_AAAUCAUAACUAUAUGCACAAACAG__
(((((((((((........((((((((..((((....)))).))).)))))..(((...........)))..)))))))................)))).......... (-18.85 = -19.21 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:08 2006