Locus 8201

Sequence ID 3R_DroMel_CAF1
Location 22,029,302 – 22,029,410
Length 108
Max. P 0.822158
window13196

overview

Window 6

Location 22,029,302 – 22,029,410
Length 108
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 84.62
Mean single sequence MFE -36.57
Consensus MFE -26.20
Energy contribution -26.16
Covariance contribution -0.04
Combinations/Pair 1.12
Mean z-score -2.05
Structure conservation index 0.72
SVM decision value 0.68
SVM RNA-class probability 0.822158
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22029302 108 - 27905053
AGUGGAAAAUAGCUUUUUCGGCACGGACAAGUGAGCACGGAGCCGUGAGAUUAGUUUUGUGGCUAUUUUGGCUUGCCACGUGUCUUUUAAAAAUACCGUA--------GCAGAGAA
.((.(((((.....))))).))((((......(((((((.(((((..(((....)))..)))))....(((....))))))).))).........)))).--------........ ( -29.46)
>DroSec_CAF1 27592 108 - 1
AGUGGAAAAUAGCUUUUUGGGCACGGACAACUGAGCACGGAGCCGUGAGAUUAGUUCUGUGGCUAUUUUGGCUUGCCACGUGUCAGUUAAAAAUGCUGCG--------CAAGAGAA
.((((.....((((...(((.((((((..(((((.((((....))))...))))))))))).)))....))))..))))(((.((((.......))))))--------)....... ( -39.90)
>DroSim_CAF1 19797 108 - 1
AGUGGAAAAUAGCUUUUUGGGCACGGACAACUGAGCACGGAGCCGUGGGAUUAGUUCUGUGGCUAUUUUGGCUUGCCACGUGCCAGUUAAAAAUGCUUCG--------CAACAGAA
.(((((.....(((.....)))......(((((.(((((.(((((..(((....)))..)))))....(((....)))))))))))))........))))--------)....... ( -35.50)
>DroEre_CAF1 21531 108 - 1
GGUGGAAAAUAGCUUUUUGGACACGGACAACUGAGCACGGAGCUGCGAGAUUAGUUCUGUGGUUAUUUCGGCUGGCCACGUGCCUGUCCGAAAUGCUGUA--------GCGCCGAA
((((....(((((.(((((((((.((((...(((.((((((((((......)))))))))).)))....((....))..)).))))))))))).))))).--------.))))... ( -43.10)
>DroYak_CAF1 29089 116 - 1
AGUGGAAAAUAGCUUUUUGGACACGGACAACUGAGCACGCAGCUGUGAGAUUAGUUCUGUGGUUAUUUUGGCUUGCCACGUGUCUGUUUAAAAUGCUGUAGCCGAGUAGCGGCGAA
........(((((.(((((((((..((((..(((.((((.(((((......))))).)))).)))...(((....)))..))))))))))))).))))).((((.....))))... ( -34.90)
>consensus
AGUGGAAAAUAGCUUUUUGGGCACGGACAACUGAGCACGGAGCCGUGAGAUUAGUUCUGUGGCUAUUUUGGCUUGCCACGUGUCUGUUAAAAAUGCUGUA________GCAGAGAA
.((((.....((((...(((.((((((..(((((.((((....))))...))))))))))).)))....))))..))))..................................... (-26.20 = -26.16 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:08 2006