Locus 8200

Sequence ID 3R_DroMel_CAF1
Location 22,025,943 – 22,026,055
Length 112
Max. P 0.945309
window13195

overview

Window 5

Location 22,025,943 – 22,026,055
Length 112
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -33.06
Consensus MFE -29.50
Energy contribution -29.58
Covariance contribution 0.08
Combinations/Pair 1.10
Mean z-score -1.55
Structure conservation index 0.89
SVM decision value 1.35
SVM RNA-class probability 0.945309
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22025943 112 + 27905053
AUUUCAGCGUGGACACGACCACUUCGGUCCGGGAUUCCCA-ACAACUCUCAUGCCAUCUUAUGGCUACCUGAUUCGGAGCACCUGCAAUUCUGGCUAAGCUUAAGAUCUGCGC
......((((((((.(((.....)))))))(((...))).-...........(((((...))))).....((((..((((....((.......))...))))..)))).)))) ( -28.20)
>DroSec_CAF1 24299 112 + 1
AUUUCAGCGUGGACACGACCACUUUGGUCCGGGAUUCCCA-ACAACUCUCAUGCCAUCUUAUGGCUCCCUGAUCCGGAGCACCUGCAAUUCCGGCUAAGCUGAAGAUCUGCGC
.(((((((((((......)))).((((.((((((((....-........((((......))))(((((.......)))))......)))))))))))))))))))........ ( -35.70)
>DroSim_CAF1 16419 112 + 1
AUUUCAGCGUGGACACGACCACUUCGGUCCGGGAAUCCCA-ACAACUCUCAUGCCAUCUUAUGGCUACCUGAUCCGGAGCACCUGCAAUUCCGGCUAAGCUGAAGAUCUGCGC
.(((((((((((((.(((.....)))))))(((...))).-)).....(((.(((((...)))))....))).(((((((....))...)))))....)))))))........ ( -33.40)
>DroEre_CAF1 18165 112 + 1
AUUUCAGCGUGGACACGACCACUUCGGCCAGGAAUUCCCA-ACUACUCUCCAGCCAUCUUAUGGCCACCUGAUCCGGAGCACCUGCAAUUCCGGCUAAGCUGAAGAUCUGCGC
.(((((((((((......))))...((((.((((((....-.......(((.(((((...)))))(....)....)))((....))))))))))))..)))))))........ ( -33.30)
>DroYak_CAF1 25603 113 + 1
AUUUCAGCGUGGACACGACCACUUUGGCCCGGAAUUCCCAAACAACUCUCACGCCAUCUUAUGGCCACCUGAUCCGGAGCACCUGCAGUUCCGGCUAAGCUGAAGAUCUCCGC
.(((((((((((......)))).((((((.((((((................(((((...)))))..((......)).((....)))))))))))))))))))))........ ( -34.70)
>consensus
AUUUCAGCGUGGACACGACCACUUCGGUCCGGGAUUCCCA_ACAACUCUCAUGCCAUCUUAUGGCUACCUGAUCCGGAGCACCUGCAAUUCCGGCUAAGCUGAAGAUCUGCGC
.(((((((((((......))))...((.((((((((................(((((...)))))..((......)).((....))))))))))))..)))))))........ (-29.50 = -29.58 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:06 2006