Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,806,943 – 2,807,038 |
Length | 95 |
Max. P | 0.963097 |
Location | 2,806,943 – 2,807,038 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -34.91 |
Consensus MFE | -27.43 |
Energy contribution | -27.31 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.19 |
Mean z-score | -2.29 |
Structure conservation index | 0.79 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2806943 95 + 27905053 GCUCUGGCCGAGAAUCCCCCCGUCUUUUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAAAAAUACAUGGACCGGGAUUGCAUCGGA .......((((.((((((.((((..(((...((((((((((((....))))))))......))))...)))...))))...))))))...)))). ( -33.60) >DroSec_CAF1 82444 93 + 1 GCUCUGGCCGAGAAUCCCCCCGUCUUUUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAA--AAACAUGGACCGGGAUUGCAUCGGA .......((((.((((((.((((.((((...((((((((((((....))))))))......))))..)--))).))))...))))))...)))). ( -35.50) >DroSim_CAF1 86622 95 + 1 GCUCUGGCCGAGAAUCCCCCCGUCUUUUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAAAAAAACAUGGACCGGGAUUGCAUCGGA .......((((.((((((.((((.((((...((((((((((((....))))))))......))))....)))).))))...))))))...)))). ( -35.10) >DroEre_CAF1 84268 92 + 1 GCGCUCGCCGAGAAUUCCCCCAUCUUGUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAA-AAUAUAUGGACCGGGG--GACUUGGA .......(((((...((((((.(((((..(.((..((((((((....))))))))..)).)..))...-.......)))..))))--))))))). ( -37.30) >DroYak_CAF1 85389 92 + 1 GCUCUCGCCGAGAAUUCCCCCAUCUUGUGAGUGCAGGCAAUGCAUUUGCAUUGGCGCCAGUUGCAAAA-UAUAUAUGGACCGGGG--GACUUGGA .......(((((...((((((....((..((((((.....))))))..))..((..(((.........-......))).))))))--))))))). ( -33.06) >consensus GCUCUGGCCGAGAAUCCCCCCGUCUUUUGAGUGCAGCCAGUGCAUUUGCAUUGGCGCCAGUUGCAAAA_AAUACAUGGACCGGGAUUGCAUCGGA .......((((.((((((.((((........((((((((((((....))))))))......)))).........))))...))))))...)))). (-27.43 = -27.31 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:56 2006