Locus 8199

Sequence ID 3R_DroMel_CAF1
Location 22,025,762 – 22,025,867
Length 105
Max. P 0.621071
window13194

overview

Window 4

Location 22,025,762 – 22,025,867
Length 105
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 84.08
Mean single sequence MFE -38.28
Consensus MFE -22.93
Energy contribution -23.37
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -2.12
Structure conservation index 0.60
SVM decision value 0.18
SVM RNA-class probability 0.621071
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22025762 105 - 27905053
GCAUUAAAAUACCGCACAGCGGCCAAUGCCCGU--G-GGUGGGGGUUU------UCUUCUCAGCCGGUGAGCGGUGGUUCGCCAUACACCA----GCCACC-CCCACCGCCCACUGACC
(((((......((((...))))..)))))..((--(-(((((.((((.------.......))))((((.((((((..........)))).----))))))-....))))))))..... ( -39.80)
>DroSec_CAF1 24119 104 - 1
GCAUUAAAAUACCGCACAGCGGCCAAUGCCCGU--G-GGUGG-GGUUU------UCUUCUCUGCCGGUGAGCGGUGGUUCACCAUACACCA----GCCACC-CCCACCGCCCACUGACC
(((((......((((...))))..)))))..((--(-(((((-(((..------........)))((((.((((((..........)))).----))))))-....))))))))..... ( -39.00)
>DroSim_CAF1 16239 104 - 1
GCAUUAAAAUACCGCACAGCGGCCAAUGCCCGU--G-GGUGG-GGUUU------UCUUCUCUGCCGGUGAGCGGUGGUUCACCAUACGCCA----GCCACC-CCCACCGCCCACUGACC
(((((......((((...))))..)))))..((--(-(((((-(((..------........)))(((..(((((((....)))).)))..----)))...-....))))))))..... ( -38.80)
>DroEre_CAF1 17985 104 - 1
GCAUUAAAAUACCGCACAGCGGCCAAUGCCCGU--GGGGUGG-GGUUC-----UCCCUCUCAGGCGGUGGGAG-------ACCAUACACCCACCAAACACCACCCACCACCCACUGACC
(((((......((((...))))..)))))..((--(((((((-(....-----..((.....)).((((((.(-------......).))))))........)))))..)))))..... ( -36.00)
>DroYak_CAF1 25412 115 - 1
GCAUUAAAAUACCGCACAGCGGCCAAUGCCCGUGUGGGGUGG-GGUUUUUUUUUUCAUCUCAGCCGGUGAGCGGUGGUUCACUAUACACAA---AACCACCAUAAACCACCCACUGACC
...........((((((.(.(((....))))))))))(((((-(.........((((((......)))))).(((((((............---)))))))........)))))).... ( -37.80)
>consensus
GCAUUAAAAUACCGCACAGCGGCCAAUGCCCGU__G_GGUGG_GGUUU______UCUUCUCAGCCGGUGAGCGGUGGUUCACCAUACACCA____GCCACC_CCCACCGCCCACUGACC
(((((......((((...))))..)))))......(.(((((.(((................)))(((((((....))))))).......................))))))....... (-22.93 = -23.37 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:05 2006