Locus 8195

Sequence ID 3R_DroMel_CAF1
Location 22,021,353 – 22,021,457
Length 104
Max. P 0.996390
window13186

overview

Window 6

Location 22,021,353 – 22,021,457
Length 104
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 87.64
Mean single sequence MFE -26.16
Consensus MFE -22.20
Energy contribution -22.20
Covariance contribution -0.00
Combinations/Pair 1.18
Mean z-score -2.57
Structure conservation index 0.85
SVM decision value 2.69
SVM RNA-class probability 0.996390
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22021353 104 + 27905053
UUCUCUACUAACAUUUCACCUGUCGGCAAUGAAACUUUCGUGGACUUAUUUUCGCUGCUGCCGAAAGUUCUAUGCCGCAGGAAAUUUAAAUUACUCUGAAA-AAC
..................((((.(((((.((.((((((((.(((......)))((....)))))))))).)))))))))))....................-... ( -24.80)
>DroSec_CAF1 19595 104 + 1
UUCUCUACCAAAAUUUCACCUGUCGGCGAUGAAACUUUCGUGGACUUAUUUUCACUGCUGCCGAAAGUUUAGUGCGGCAGGAAAUUUAAAUUACUCUGAAA-AAC
..........(((((((....(((.((((........)))).))).........((((((((.........).))))))))))))))..............-... ( -25.90)
>DroSim_CAF1 11652 104 + 1
UUCUCUACCAACAUUUCACCUGUCGGCGAUGAAACUUUCGUGGACUUAUUUUCACUGCUGCCGAAAGUUUAGUGCCGCAGGAAAUUUAAAUUACUCUGAAA-AAC
..................((((.(((((...(((((((((..(.(...........))..).))))))))..)))))))))....................-... ( -26.00)
>DroEre_CAF1 13423 103 + 1
CUUUCUACUACCAUUUCACCUGUCGGCGUCGAAACUUUUGCGGACUUAUUUUCCCGGCUGUCGAAAGUUUGGCGCCGCAGGAAAUUUAAAUUACUCUAAA--AAC
..................((((.(((((((.((((((((((((.((.........))))).))))))))))))))))))))...................--... ( -31.60)
>DroYak_CAF1 20834 105 + 1
UUUUCUACUACCAUUUCCUCUUUCGGCAUUGAAACUUUCGCGGACUCAUUUUCACGGCUGUCGAAAGUUUGGUGCCGCAGCAAAUUUAAAUUACUCUAAAACAAC
.......................((((((..((.(((((((((.((.........))))).))))))))..))))))............................ ( -22.50)
>consensus
UUCUCUACUAACAUUUCACCUGUCGGCGAUGAAACUUUCGUGGACUUAUUUUCACUGCUGCCGAAAGUUUAGUGCCGCAGGAAAUUUAAAUUACUCUGAAA_AAC
..................((((.(((((...((((((((((((.(...........)))).)))))))))..)))))))))........................ (-22.20 = -22.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:58 2006