Locus 8194

Sequence ID 3R_DroMel_CAF1
Location 22,019,727 – 22,019,821
Length 94
Max. P 0.989764
window13185

overview

Window 5

Location 22,019,727 – 22,019,821
Length 94
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 93.70
Mean single sequence MFE -21.82
Consensus MFE -20.08
Energy contribution -20.52
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.71
Structure conservation index 0.92
SVM decision value 2.18
SVM RNA-class probability 0.989764
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22019727 94 - 27905053
AAAUGAGAACGGAAGAAACCAUCACGGAGGGGAG---CCCUACACUGUAACUCAAGAUGGUAGGAAGAUCAUUACAUUGAUCAAUGAACCCAGAGAU
.........(....)...((.....)).(((...---.(((((.((........))...)))))..(((((......)))))......)))...... ( -19.90)
>DroSec_CAF1 17985 94 - 1
AAAUGAGAACGGAAGAAAACAUCUCGGAGGGGAG---CCCUACACUGUAACUCAAGAUGGUAGGAAGAUCAUUACACUGAUCAAUGAACCCAGAGAU
.........(....).....(((((....(((..---.(((((.((........))...)))))..(((((......)))))......))).))))) ( -22.90)
>DroSim_CAF1 10025 94 - 1
AAAUGAGAACGGAAGAAAACAUCUCGGAGGGGAG---CCCUACACUGUAACUCAAGAUGGUAGGAAGAUCAUUACACUGAUCAAUGAACCCAGAGAU
.........(....).....(((((....(((..---.(((((.((........))...)))))..(((((......)))))......))).))))) ( -22.90)
>DroEre_CAF1 11754 97 - 1
AAUUGGGAACGGAAGAAAACAUCUCGAAGGGGAGCGGCCCUACACUGAAACUCAAGAUGGUAGGAAGAUCAUUACACUGAUCAAUGAACCCAGAGAU
..(((((..(....)......((((....)))).....(((((.((........))...)))))..(((((......)))))......))))).... ( -23.80)
>DroYak_CAF1 19143 94 - 1
AAAUGAGAACGGAAGAAAACAUCACGAAGGGGAG---UCCUGCACAGUAACACAAGAUGGUAGGAAGAUCAUUACACUGAUCAAUGAACCCAGAGAU
.........(....).............(((...---((((((.((...........)))))))).(((((......)))))......)))...... ( -19.60)
>consensus
AAAUGAGAACGGAAGAAAACAUCUCGGAGGGGAG___CCCUACACUGUAACUCAAGAUGGUAGGAAGAUCAUUACACUGAUCAAUGAACCCAGAGAU
.........(....).....(((((....(((......(((((.((........))...)))))..(((((......)))))......))).))))) (-20.08 = -20.52 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:57 2006