| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,018,093 – 22,018,206 |
| Length | 113 |
| Max. P | 0.900623 |
| Location | 22,018,093 – 22,018,206 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.94 |
| Mean single sequence MFE | -18.99 |
| Consensus MFE | -1.04 |
| Energy contribution | -1.12 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.05 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.900623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22018093 113 + 27905053 ---ACAUUGAGGGAAAACAAUUCGCAUUCUUAUUUAAAGCAGCUACAACAAUUUAUACUUAAAAUUAAUUUAAAAGUAAUUUACUUUUCCCUCU----AAUGACACCUAAUACUAAUCCG ---.(((((((((((((......((...(((.....)))..))............(((((.............)))))......))))))))).----)))).................. ( -17.02) >DroSec_CAF1 16384 119 + 1 A-UACACUGAGGUAAACCAAUUCGCAUUCUUAAUUAAAGUUUCCAAAAUAAUUUAUACUUAAAAAGAAUUUUAAAGUCAUUUACUUUUCCCCCUAAGUAAUGGCACCUAAUACUAAUCCG .-.......((((............((((((..((.((((................)))).))))))))......((((((.((((........))))))))))))))............ ( -13.69) >DroSim_CAF1 8380 119 + 1 A-UACACUGAGGUAAACCAAUUCACAUUCUUAAUUAAAGUUGCCAAAACAAUUUAUACUUAAUACGGAUUUUAAAGUAAUUUACUUUUCCCCCUCAGUAAUGGCACCUAAUACCAAUCCG .-...(((((((........................((((((......))))))...........(((...((((....))))....))).)))))))..(((.........)))..... ( -17.30) >DroEre_CAF1 10249 119 + 1 AGUACACUGAGGGAACUGAAUUCGCAUUCCCAAUGAAAGCUGCAAAAUAAAUGUAUGCUUUAAUUGAAU-GCGAAGUAAUUUACAUCUCUCCUUAAGUAACGAUUCUCACUACUAAUCCG ........((((((......(((((((((..(((.(((((((((.......)))).))))).)))))))-)))))(((...))).))))))....((((..(.....)..))))...... ( -25.70) >DroYak_CAF1 17483 116 + 1 AGUACACUGAGGGAACU----UUGCAAUCUUAAUAAAAACUGCAAAAUAAAAUUAUACUUUAAUGUAAUUUAGAAGUAAUUUAUAUGUCCCUUUAAGUAAUGACACUUAGUACUUAUCCG (((((...((((((..(----(((((..............))))))...(((((((..(((((......))))).))))))).....))))))(((((......))))))))))...... ( -21.24) >consensus A_UACACUGAGGGAAACCAAUUCGCAUUCUUAAUUAAAGCUGCAAAAAAAAUUUAUACUUAAAAUGAAUUUAAAAGUAAUUUACUUUUCCCCCUAAGUAAUGACACCUAAUACUAAUCCG ..........((((.........((.............))...............(((((.............))))).........))))............................. ( -1.04 = -1.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:55 2006