Locus 8191

Sequence ID 3R_DroMel_CAF1
Location 22,016,771 – 22,016,891
Length 120
Max. P 0.822639
window13181 window13182

overview

Window 1

Location 22,016,771 – 22,016,891
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.83
Mean single sequence MFE -47.68
Consensus MFE -37.86
Energy contribution -39.14
Covariance contribution 1.28
Combinations/Pair 1.06
Mean z-score -1.40
Structure conservation index 0.79
SVM decision value -0.04
SVM RNA-class probability 0.514195
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22016771 120 + 27905053
UCGGGCCUGUGUUGGACUGCACCCCGCCCCAGACGCGUCGAAAUUUCGGAGUCUUUAGAAGGAUGUCCCUCGGAUACACCGUUCCCUGGCUCUGGGGCAGGCAGGUCCACAGCAGACAAC
..((((((((...((........))((((((((.((...........((((((((....))))).)))...(((........)))...))))))))))..))))))))............ ( -44.00)
>DroSec_CAF1 15114 120 + 1
UCGGGCCUGUGUUGGACUGCACCCCGCCCCAGACGCGUCGAAAUUUGGGAGUCUUUAGAAGGAUGUCCCUCGGAUACACCGUUCCCUGGCUCUGGGGCAGGCAGGUCCACAGCAGACAAC
..((((((((...((........))((((((((.((..........(((((((((....))))).))))..(((........)))...))))))))))..))))))))............ ( -47.40)
>DroSim_CAF1 7095 120 + 1
UCGGGCCUGUGUUGGACUGCACACCGCCCCAGACGCGUCGAAAUUUGGGAGUCUUUAGAAGGAUGUCCCUCGGAUACACAGUUCCCUGGCUCUGGGGCAGGCAGGUCCACAGCAGGCAAC
....((((((..((((((((.....((((((((.((.((((.....(((((((((....))))).)))))))).....(((....)))))))))))))..))).)))))..))))))... ( -53.30)
>DroEre_CAF1 7056 120 + 1
UGGGGCCUGUGUUGGAUUCCACCCCGCCCCAGAUGCGUCGAAACUUGGGAGUGUUUGGGUGAAUGUCCCUCGGAUAGACCUUUCCCUGGCUCUGGGGCAGGCAGGUCCCUAGCAGACAAG
.(((((((((...((........))((((((((.((((....))..(((((.....((((...(((((...))))).)))))))))..))))))))))..)))))))))........... ( -50.50)
>DroYak_CAF1 15329 120 + 1
UGGGCCCUGUGUUGGAUUGCACACCGCCCCAGACUCGUCGAAAUUUGGGAGUCUUCAUGUAAAUGUCCCUGGGGUAGACCUUUCCCUGGCUCUGGAACAGGCAGCUCCCCAGCAGACAAC
.((((..(((((......)))))..)))).((((((.((((...)))))))))).........((((.((((((.((.(((((((........)))).)))...))))))))..)))).. ( -43.20)
>consensus
UCGGGCCUGUGUUGGACUGCACCCCGCCCCAGACGCGUCGAAAUUUGGGAGUCUUUAGAAGGAUGUCCCUCGGAUACACCGUUCCCUGGCUCUGGGGCAGGCAGGUCCACAGCAGACAAC
..((((((((...((........))((((((((.((..........((((((((......)))).))))..(((........)))...))))))))))..))))))))............ (-37.86 = -39.14 +   1.28)

alignment

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secondary structure

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dotplot

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Window 2

Location 22,016,771 – 22,016,891
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.83
Mean single sequence MFE -49.96
Consensus MFE -36.42
Energy contribution -37.94
Covariance contribution 1.52
Combinations/Pair 1.09
Mean z-score -2.17
Structure conservation index 0.73
SVM decision value 0.69
SVM RNA-class probability 0.822639
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22016771 120 - 27905053
GUUGUCUGCUGUGGACCUGCCUGCCCCAGAGCCAGGGAACGGUGUAUCCGAGGGACAUCCUUCUAAAGACUCCGAAAUUUCGACGCGUCUGGGGCGGGGUGCAGUCCAACACAGGCCCGA
...(((((.(((((((.(((((((((((((((..(..(.(((.((....(((((....))))).....)).)))...)..)...)).))))))))))...))))))).)))))))).... ( -53.10)
>DroSec_CAF1 15114 120 - 1
GUUGUCUGCUGUGGACCUGCCUGCCCCAGAGCCAGGGAACGGUGUAUCCGAGGGACAUCCUUCUAAAGACUCCCAAAUUUCGACGCGUCUGGGGCGGGGUGCAGUCCAACACAGGCCCGA
...(((((.(((((((.(((((((((((((((..(..(..((.((....(((((....))))).....)).))....)..)...)).))))))))))...))))))).)))))))).... ( -50.40)
>DroSim_CAF1 7095 120 - 1
GUUGCCUGCUGUGGACCUGCCUGCCCCAGAGCCAGGGAACUGUGUAUCCGAGGGACAUCCUUCUAAAGACUCCCAAAUUUCGACGCGUCUGGGGCGGUGUGCAGUCCAACACAGGCCCGA
...(((((.(((((((.((((((((((((((((((....))).......(((((....))))).....................)).))))))))))...))))))).)))))))).... ( -52.60)
>DroEre_CAF1 7056 120 - 1
CUUGUCUGCUAGGGACCUGCCUGCCCCAGAGCCAGGGAAAGGUCUAUCCGAGGGACAUUCACCCAAACACUCCCAAGUUUCGACGCAUCUGGGGCGGGGUGGAAUCCAACACAGGCCCCA
...........(((.(((.(((((((((((((..((((..((.....))..(((.......)))......))))..((....)))).)))))))))))(((........)))))).))). ( -49.10)
>DroYak_CAF1 15329 120 - 1
GUUGUCUGCUGGGGAGCUGCCUGUUCCAGAGCCAGGGAAAGGUCUACCCCAGGGACAUUUACAUGAAGACUCCCAAAUUUCGACGAGUCUGGGGCGGUGUGCAAUCCAACACAGGGCCCA
..(((((.((((((((..((((.((((.......)))).)))))).))))))))))).........((((((............)))))).((((..((((........))))..)))). ( -44.60)
>consensus
GUUGUCUGCUGUGGACCUGCCUGCCCCAGAGCCAGGGAACGGUGUAUCCGAGGGACAUCCUUCUAAAGACUCCCAAAUUUCGACGCGUCUGGGGCGGGGUGCAGUCCAACACAGGCCCGA
...(((((...(((((..((((((((((((((..(..(.(((.....))).((((...............))))...)..)...)).)))))))))).))...)))))...))))).... (-36.42 = -37.94 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:54 2006