Locus 8190

Sequence ID 3R_DroMel_CAF1
Location 22,008,948 – 22,009,039
Length 91
Max. P 0.754686
window13180

overview

Window 0

Location 22,008,948 – 22,009,039
Length 91
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 85.84
Mean single sequence MFE -24.91
Consensus MFE -17.38
Energy contribution -16.45
Covariance contribution -0.94
Combinations/Pair 1.19
Mean z-score -1.89
Structure conservation index 0.70
SVM decision value 0.48
SVM RNA-class probability 0.754686
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22008948 91 - 27905053
CAGUGUUUUUCUUGGGU-------UUUUGUUUUAUUUCGGG-UCCC--AUCCUUGGGGUC-UCUCGAAUUAUGACAAAUGAUCCUGACUUUCGGGCUGAAAG
((((.(.......((((-------(((((((.((.((((((-((((--(....)))))..-.)))))).)).)))))).)))))........).)))).... ( -26.16)
>DroSim_CAF1 45209 91 - 1
CAGUGUUUUUCUUGGGU-------UUUUGUUUUAUUUUGGG-UCCC--AUCCUUGGGGUC-CCUCGAAUUAUGACAAAUGAUCCUGACUUUCGGGCUGAAAG
((((.(.......((((-------(((((((..((((.(((-((((--(....))))).)-))..))))...)))))).)))))........).)))).... ( -25.96)
>DroEre_CAF1 50980 91 - 1
CAGUGUUUUUCUUGGGU-------UUUUGUUUUAUUUCUGG-UCCC--AACGUUGGGGUC-CCUCGAAUUAUGACAAAUGAUCCUGACUUACGGACUGAAAG
((((((...((..((((-------(((((((.((.(((.((-((((--(....))))).)-)...))).)).)))))).))))).))...))..)))).... ( -22.50)
>DroAna_CAF1 54907 102 - 1
UAGUGUUUUUCUUUUGUUUCUGUUUUUUGUUUUAUUUUGGGGUCCCUCUUCCUUGGGGGCAGCUCGAAUUAUGACAAAUGAUUGUGACUUACGGGCUGAAAC
....(((((.((..((..((.(((.((((((.((.((((((.((((((......))))).).)))))).)).)))))).)))...))..))..))..))))) ( -25.00)
>consensus
CAGUGUUUUUCUUGGGU_______UUUUGUUUUAUUUCGGG_UCCC__AUCCUUGGGGUC_CCUCGAAUUAUGACAAAUGAUCCUGACUUACGGGCUGAAAG
((((.(.....(..((.........((((((.((.((((((.((((........))))....)))))).)).))))))....))..).....).)))).... (-17.38 = -16.45 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:52 2006