Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,007,507 – 22,007,627 |
Length | 120 |
Max. P | 0.829969 |
Location | 22,007,507 – 22,007,627 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -45.62 |
Consensus MFE | -37.38 |
Energy contribution | -39.00 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.06 |
Mean z-score | -2.29 |
Structure conservation index | 0.82 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22007507 120 + 27905053 CGUUGGCAGUGUCAUAAAAGUUUUGUGGCAGCAGCUGGCAGCGGAAGUUGACGGGCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCCAGUCGAAGCGACAAAAUUAAGUA .(..(((((((((((((.....))))))).((((((.(((((....)))).).)))))).......))))))..)((.(((...(((((((.....)))))))))).))........... ( -47.30) >DroSim_CAF1 43787 120 + 1 CGUUGGCAGUGUCAUAAAAGUUUUGUGGCAGCAGCUGGCAGCGGAAGUUGACGGGCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCCAGUCGAAGCGACAAAAUUAAGUA .(..(((((((((((((.....))))))).((((((.(((((....)))).).)))))).......))))))..)((.(((...(((((((.....)))))))))).))........... ( -47.30) >DroEre_CAF1 49524 120 + 1 CUUUGGCAGUGUCAUAAAAGUUUUGUGGCAGCAGCUGGCAGCGGAAGUUGACGGGCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCCAGUCGAAGCGACAAAAUUAAGUA ....(((((((((((((.....))))))).((((((.(((((....)))).).)))))).......))))))...((.(((...(((((((.....)))))))))).))........... ( -47.10) >DroAna_CAF1 53462 119 + 1 CUUCGGCUUUGUCAUAAAACUUUUCUGCCAGCAGCUGCCAAAGGAAGUUGACG-GCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCAAGUCGGAGCGACAAAAUUAAGUA .......((((((.............(((..(((((.((...)).)))))..)-))..((((((((((..(..(((.........)))..)..)))))).))))..))))))........ ( -40.80) >consensus CGUUGGCAGUGUCAUAAAAGUUUUGUGGCAGCAGCUGGCAGCGGAAGUUGACGGGCUGUCCGCUUGGCUGCCUUCGUGGCUGAUUCGAUUGUGGCCCAGUCGAAGCGACAAAAUUAAGUA ....(((((((((((((.....))))))).((((((.(((((....)))).).)))))).......))))))...((.(((...(((((((.....)))))))))).))........... (-37.38 = -39.00 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:51 2006