| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,004,224 – 22,004,316 |
| Length | 92 |
| Max. P | 0.557373 |
| Location | 22,004,224 – 22,004,316 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 81.64 |
| Mean single sequence MFE | -21.55 |
| Consensus MFE | -16.23 |
| Energy contribution | -15.97 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22004224 92 - 27905053 CUGGGUUACAGCCAUUCCAUUCCUUUCCCGGUGGGAUACCCACAUACCAUCGUGUUAAGUCCGGUUAAUUAAUGCGCCCUUAACCGGAA---AAA ...(((....))).........(((..(((((((............)))))).)..)))(((((((((...........))))))))).---... ( -23.20) >DroSim_CAF1 40547 92 - 1 CUGGGUUACAGCCAUUCCAUUCCUUUCCCGGUGGAAUACCCACAUACCAUCGUGUUAAGUCCGGUUAAUUAAUGCGCCCUUAACCGGAA---AAA .(((((.......((((((((........))))))))))))).................(((((((((...........))))))))).---... ( -22.51) >DroEre_CAF1 46267 92 - 1 CUGGGUUACAGCCAUACCAUUCCUUUCCCGGUGGGAUGCCCACAUACCAUCGUGUUAAGUCCGGUUAAUUAAUGCGCCCUUAACCGGAA---AAA ...(((....))).........(((..(((((((.(((....))).)))))).)..)))(((((((((...........))))))))).---... ( -25.10) >DroAna_CAF1 50464 80 - 1 CUGGG-----GCCAUA----------UCCUGUGGGAUAUCCACAUACCAUACUGUUAAGUUCAGUUAAUUAAUGCCCUUCUGACCGAAAACAAAA ..(((-----((....----------...(((((.....)))))......((((.......))))........)))))................. ( -15.40) >consensus CUGGGUUACAGCCAUACCAUUCCUUUCCCGGUGGGAUACCCACAUACCAUCGUGUUAAGUCCGGUUAAUUAAUGCGCCCUUAACCGGAA___AAA ..(((.....................))).((((.....))))................(((((((((...........)))))))))....... (-16.23 = -15.97 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:50 2006