Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,003,833 – 22,003,982 |
Length | 149 |
Max. P | 0.999986 |
Location | 22,003,833 – 22,003,945 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 68.45 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -14.06 |
Energy contribution | -14.73 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.20 |
Mean z-score | -1.98 |
Structure conservation index | 0.49 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22003833 112 + 27905053 UG------GUACGCAUGAGAAUGAAAAUGGUCUGGCUUAAAUUGUAUGAAAGGAAACACAACGUCGUCAGAUAUUGGCUUUUGUCCUUUUAUUUGCAAA--GGCCACAUUCUGGCUACCA .(------(((.((...((((((......(((((((.....((((......(....)))))....)))))))..((((((((((..........)))))--))))))))))).)))))). ( -34.20) >DroSim_CAF1 40167 100 + 1 UGAAGAGGGUACACAUGAGCAUGAAAAUGUCCUGGCUUAAAUUGUAUGAAAGGAAACACAAUGUCUUCAGAUAUUGGCUUUUGUCCUUUUAUUUGCGAA--G------------------ ..(((.(((.........((((....)))))))..)))...(((((((((((((....(((((((....))))))).......)))))))))..)))).--.------------------ ( -22.90) >DroEre_CAF1 45882 115 + 1 GCAGGAAGUUA-GGGUGACAAUGAAAAUUGCCUGGGUAAAAUUAC-UAAAAGGAAAUAAAAUGUCGUCAGAUAUUUGCUUUUAUCAUUUUAUUUGCGACAUUGCCACAUUGUGGCA---A (((((....((-((((((((((....))))(((.((((....)))-)...))).....(((((((....))))))).......)))))))))))))....(((((((...))))))---) ( -28.10) >consensus UGA_GA_GGUACGCAUGAGAAUGAAAAUGGCCUGGCUUAAAUUGUAUGAAAGGAAACACAAUGUCGUCAGAUAUUGGCUUUUGUCCUUUUAUUUGCGAA__GGCCACAUU_UGGC____A .........................................(((((((((((((....(((((((....))))))).......)))))))))..))))...(((((.....))))).... (-14.06 = -14.73 + 0.68)
Location | 22,003,867 – 22,003,982 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 62.50 |
Mean single sequence MFE | -24.43 |
Consensus MFE | -14.06 |
Energy contribution | -14.73 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.20 |
Mean z-score | -2.62 |
Structure conservation index | 0.58 |
SVM decision value | 5.42 |
SVM RNA-class probability | 0.999986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22003867 115 + 27905053 AUUGUAUGAAAGGAAACACAACGUCGUCAGAUAUUGGCUUUUGUCCUUUUAUUUGCAAA--GGCCACAUUCUGGCUACCAUAUGCA---AUAAAUGCCAUGGAAAUAUACCUUUGCCAUA ((((((((...(....).....((.((((((...((((((((((..........)))))--)))))...)))))).))..))))))---)).......(((((((......))).)))). ( -31.40) >DroSim_CAF1 40207 88 + 1 AUUGUAUGAAAGGAAACACAAUGUCUUCAGAUAUUGGCUUUUGUCCUUUUAUUUGCGAA--G------------------------------AAUGCCAUGCAAAUAUACGUUUGUCAUA .(((((((((((((....(((((((....))))))).......)))))))))..)))).--.------------------------------......((((((((....))))).))). ( -20.70) >DroEre_CAF1 45921 102 + 1 AUUAC-UAAAAGGAAAUAAAAUGUCGUCAGAUAUUUGCUUUUAUCAUUUUAUUUGCGACAUUGCCACAUUGUGGCA---AUAUGUACGUACAAAUACCA--------------UACCAUA .....-.....((.........((((.((((((..((.......))...))))))))))((((((((...))))))---))...............)).--------------....... ( -21.20) >consensus AUUGUAUGAAAGGAAACACAAUGUCGUCAGAUAUUGGCUUUUGUCCUUUUAUUUGCGAA__GGCCACAUU_UGGC____AUAUG_A___A_AAAUGCCAUG_AAAUAUAC_UUUGCCAUA .(((((((((((((....(((((((....))))))).......)))))))))..))))...(((((.....)))))............................................ (-14.06 = -14.73 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:49 2006