Locus 8186

Sequence ID 3R_DroMel_CAF1
Location 22,001,033 – 22,001,141
Length 108
Max. P 0.773597
window13175

overview

Window 5

Location 22,001,033 – 22,001,141
Length 108
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.61
Mean single sequence MFE -28.23
Consensus MFE -20.51
Energy contribution -22.07
Covariance contribution 1.56
Combinations/Pair 1.06
Mean z-score -2.09
Structure conservation index 0.73
SVM decision value 0.54
SVM RNA-class probability 0.773597
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22001033 108 + 27905053
------------GGAAGUUGAUUUACAAAUUUGCACUCUGCAGAUUACUUCCGUUUAGGAAGGAUAUGAUUUGCGUUUCAGUAUAGAUAUCUUCUUUGCUUCGCUUUCUAAUAUUAUUUC
------------((((((.........(((((((.....)))))))))))))..((((((((((.(((.....))).))((((.(((.....))).))))...))))))))......... ( -24.80)
>DroEre_CAF1 43083 120 + 1
AAAGGGCAAACAGGAAGAUGACUUACAAAUUUGCACUCUGCAGAUUACUUCCGGUUAGGAAGGAUAUGAUUUGUGUUUCGGUAUAAAUAUCUUCUCUGCUUUGCUUUCUAACCUUAUUUU
..((((((((((((((((((...(((.(((((((.....))))))).(((((.....)))))..................)))....))))))).))).))))))))............. ( -32.80)
>DroYak_CAF1 41710 120 + 1
AAAGUGGAAACAGGAAGAUGAGUUACAAAUUUGCACUCUGCAGAUAACUUCCGGUUAGGAAGGAUAUGAUUUGUGUUUCAGUAUAAAUAACUCUUUUGCUUCGCAUUCUAACCUUAUUUU
....((....))(((((.((.....)).((((((.....))))))..)))))((((((((((((....(((((((......)))))))...))))))((...))...))))))....... ( -27.10)
>consensus
AAAG_G_AAACAGGAAGAUGACUUACAAAUUUGCACUCUGCAGAUUACUUCCGGUUAGGAAGGAUAUGAUUUGUGUUUCAGUAUAAAUAUCUUCUUUGCUUCGCUUUCUAACCUUAUUUU
............(((((.((.....))(((((((.....))))))).)))))((((((((((....(((........)))(((.(((.....))).)))....))))))))))....... (-20.51 = -22.07 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:47 2006