| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,991,592 – 21,991,711 |
| Length | 119 |
| Max. P | 0.771052 |
| Location | 21,991,592 – 21,991,711 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.85 |
| Mean single sequence MFE | -33.05 |
| Consensus MFE | -14.38 |
| Energy contribution | -15.62 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21991592 119 - 27905053 UCCUUUCUCCUUUCGUUCCUUCUGUUCGAUGAAUAGCAGGAUUGAGGCUUUUGAGCCUGACAUUCAGCUUUUGGUUUGCCAGAGGAUUUCAUAAAGGUUUAUGAA-AGGCAUCUAAGGUA .((((((.((((....((((.((((((...)))))).))))..))))....(((((((.........(((((((....))))))).........))))))).)))-)))........... ( -35.77) >DroSim_CAF1 26832 113 - 1 UCCAUUCUCCUUUCGUUCCUUCCGUUCGAUGAAUGGCAGGAUUGAGCCUUUU------GACAUUCAGCUUUUGGUUUGCCAGAGGAUUUCAUAAAGGUUUAUGAA-AGGCAUCUAAGGUA ........(((((((.((((.((((((...)))))).)))).((((((((((------((.......(((((((....)))))))...))).)))))))))))))-)))........... ( -35.00) >DroEre_CAF1 33479 118 - 1 UGCUUUCUCCUUUCGUUCCUUCUGUUCGAUGAAUAGCAGGAUUGAGGCUUUUGAGCCUGACAUUCAGCUUUUGGUUUGCCAGGGGAUUUCAUA-AGGUUUUUGAA-AGUCAUCUUAGGUA ........(((.(((.((((.((((((...)))))).)))).)))(((((((((((((.........(((((((....)))))))........-))))))..)))-)))).....))).. ( -33.43) >DroYak_CAF1 32174 119 - 1 UUUUUUCUGAUUUCGUUCCUUCUGUGCGAUGAAUGGCAGGAUUGAGGCCUUUGAGCCUGACAUUCAGCUUUUGGUUUGCCAGAGGAUUUCAUAAAGGUUUUUGAA-AGGCAUCUAAGCUA ....(((((..((((((.(......).))))))...)))))..((.((((((((((((.........(((((((....))))))).........))))))...))-)))).))....... ( -32.67) >DroAna_CAF1 37780 104 - 1 UUCCUUUAGCCUUCGUGCUUUCUAUCCAAUGAAAGGCAAGACUCGGUCUU-U------GACAGAUGGGUUUUGGCUUUGCUGCGGGCUUUAUAUGAGAUUAUGAAAAGGCA--------- ........(((((((((.((((.........((((.(((((((((.(((.-.------...)))))))))))).))))((.....)).......)))).)))))..)))).--------- ( -28.40) >consensus UCCUUUCUCCUUUCGUUCCUUCUGUUCGAUGAAUGGCAGGAUUGAGGCUUUUGAGCCUGACAUUCAGCUUUUGGUUUGCCAGAGGAUUUCAUAAAGGUUUAUGAA_AGGCAUCUAAGGUA ............(((.((((.((((((...)))))).)))).)))(((...................(((((((....)))))))..((((((......))))))..))).......... (-14.38 = -15.62 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:24 2006