| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,983,192 – 21,983,402 |
| Length | 210 |
| Max. P | 0.839953 |
| Location | 21,983,192 – 21,983,289 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.43 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -13.11 |
| Energy contribution | -13.80 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839953 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21983192 97 + 27905053 CGAAAAUUAUGUCUAAGCACUUAAGUAGGUGUUUAGUGCCCAGAGGAUGGGGACAACUUGG---------GGCUGUGGA--------GUGUUGUG------CGAGCGUGAUAGGAUAAAG .....(((((((((((((((((....)))))))))).((((.(((..((....)).))).)---------)))......--------........------...)))))))......... ( -28.10) >DroEre_CAF1 24430 105 + 1 CGAAAAUUAUGUCUAAGCACUUAAGUAGGUGUUUAGAGCCCAGAGGAUGGGGACAACUUGG---------GGCUGUGGAGGUGAGGUGUGAGGUG------CAACCGUGUUAGGAUAAAG .........(((((.(((((...........((((.(((((.(((..((....)).))).)---------)))).))))(((...((.......)------).)))))))).)))))... ( -31.80) >DroYak_CAF1 23567 100 + 1 CGAAAAUUAUGUCUAAGCACUUAAGUAGGUGUUUAGUGCCCAGAGGAUGGAGACAACUUGG---------GGCUGCGGUG-----AUGUGAUGUG------CGAGCGUGUUAGGAUAAAG ((...(((((((((((((((((....)))))))))((((((.(((..((....)).))).)---------))).))...)-----)))))))...------))................. ( -29.90) >DroAna_CAF1 29545 112 + 1 CGAAAAUUAUAUCUAAGCACUUAAGCAGGUGCUUAGAGCCCAGGGAAGAGGGAAAACUUGAAAAGUUAAUGCCUGUGUA--------UCCUUGUGGGCGUUGGAGUUUGUUGGCGCAAUG ...........(((((((((((....))))))))))).((((((((.(.(((..((((.....))))....)))...).--------)))))).))((((..(......)..)))).... ( -36.20) >consensus CGAAAAUUAUGUCUAAGCACUUAAGUAGGUGUUUAGAGCCCAGAGGAUGGGGACAACUUGG_________GGCUGUGGA________GUGAUGUG______CGAGCGUGUUAGGAUAAAG .......(((((((((((((((....))))))))))..((((.....)))).....................................................)))))........... (-13.11 = -13.80 + 0.69)
| Location | 21,983,289 – 21,983,402 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 96.46 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -23.93 |
| Energy contribution | -24.27 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.811010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21983289 113 - 27905053 UGCAAAAGUAUGUAAAAGGGAUACACAAUGUCAGGGUAAAUAUGCAAAAUGAUAACCAGGACCACAGGAAACGGCGUAUCUCAACCACAGACUUUGUGGAAACAUGAGGCUAA .((.....(((((....(((((((.(...(((..(((.(.(((.....))).).)))..)))....(....).).)))))))..((((((...))))))..)))))..))... ( -28.20) >DroEre_CAF1 24535 113 - 1 UGCAAAAGUAUAUAAAAGGGAUACACAAUGUCAGGGUAAAUAUGCAAAAUGAUAACCAGGACCACAGGAAACGGCGUAUCUCCACCACAGGCUUUCUGAAAACAUGAGGCAAA .................(((((((.(...(((..(((.(.(((.....))).).)))..)))....(....).).))))).)).......(((((.((....)).)))))... ( -22.00) >DroYak_CAF1 23667 113 - 1 UGCAAAAGUAUGUAAAAGGGAUACACAAUGUCAGGGUAAAUAUGCAAAAUGAUAACCAGGACCACAGGAAACGGCGUAUCUCAACCACAGGCUUUCUGGAAACAUGAGGCAAA ((((......))))...(((((((.(...(((..(((.(.(((.....))).).)))..)))....(....).).)))))))........(((((.((....)).)))))... ( -27.90) >consensus UGCAAAAGUAUGUAAAAGGGAUACACAAUGUCAGGGUAAAUAUGCAAAAUGAUAACCAGGACCACAGGAAACGGCGUAUCUCAACCACAGGCUUUCUGGAAACAUGAGGCAAA .................(((((((.(...(((..(((.(.(((.....))).).)))..)))....(....).).)))))))........((((..((....))..))))... (-23.93 = -24.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:21 2006