| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,981,745 – 21,981,865 |
| Length | 120 |
| Max. P | 0.800824 |
| Location | 21,981,745 – 21,981,865 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -22.79 |
| Consensus MFE | -19.65 |
| Energy contribution | -20.43 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.800824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21981745 120 - 27905053 CAUUGACAAAGAAAAUCACAAAGCCACCAAGAUCAAAUCAAACAAAAAGCGGCAAGCGACCACUGAAAGGUCAUGUGAAAUAGAAACGGAAAAUACUGAUAAAAUUACUUUGUCCUUUUA ....(((((((....(((((..(((.(.....................).)))....((((.......)))).)))))........(((......))).........)))))))...... ( -22.80) >DroEre_CAF1 22976 120 - 1 CAUUGACAAAGAAAAUCACAAGGCCACCAAGAUCCAAUCAAACAAAAAGUGGCAAGCGACAACUGAAAGGUUAUGUGAAAUGGCAACGGAAAGUACUGAUAAAAUUACUUUGUCCUUUUA ....(((((((....(((((..(((((.....................))))).......((((....)))).)))))..((....))...................)))))))...... ( -24.40) >DroYak_CAF1 22145 119 - 1 CAUUGACAAAGAAAAUCACAAAGCCACCAAGAUCCAAUCAAACAAAAAGUGGCAAGCGACCAUUGAAAGGUUAUGUGAAAUGGAAACGGAAAAUACUGAUAAAAUUACUUU-UCCUUUCA ..........((((.(((((..(((((.....................)))))....((((.......)))).)))))...(....)((((((...............)))-))))))). ( -21.16) >consensus CAUUGACAAAGAAAAUCACAAAGCCACCAAGAUCCAAUCAAACAAAAAGUGGCAAGCGACCACUGAAAGGUUAUGUGAAAUGGAAACGGAAAAUACUGAUAAAAUUACUUUGUCCUUUUA ....(((((((....(((((..(((((.....................)))))....((((.......)))).)))))........(((......))).........)))))))...... (-19.65 = -20.43 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:19 2006