Locus 8174

Sequence ID 3R_DroMel_CAF1
Location 21,980,556 – 21,980,658
Length 102
Max. P 0.791564
window13144

overview

Window 4

Location 21,980,556 – 21,980,658
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 87.60
Mean single sequence MFE -24.06
Consensus MFE -15.34
Energy contribution -17.06
Covariance contribution 1.72
Combinations/Pair 1.08
Mean z-score -2.99
Structure conservation index 0.64
SVM decision value 0.59
SVM RNA-class probability 0.791564
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21980556 102 + 27905053
UUAUAAAGUUUUUGCCAUCAACAAAAUAGGCAACUAGUGGAUGAAAAAUUUCUUCAUAAGUGCUGUAGCAAAACACAACAAUGUUUUUCUUCAA-GCAGAUCA
((((.(((..(((..((((..((...(((....))).))))))..)))...))).)))).((((..((.((((((......)))))).))...)-)))..... ( -18.90)
>DroSec_CAF1 20165 103 + 1
UUAUAAAGUUUUUGCCAUCAACCACAUAGGCAACUAGUGGCUGAAAAAUUUCUUCACAAGUGCUGUAGCAAAACACAACAAUGUUUUUCUUCAGGGCAGAUCA
..........((((((.(((.((((.(((....))))))).)))..................(((.((.((((((......)))))).)).)))))))))... ( -28.00)
>DroSim_CAF1 24288 102 + 1
UUAUAAAGUUUUUGCCAUCAACCACAUAGGCAACUAGUGGCUGAAAAAUUUCUUCAUAAGUGCUGUAGCAAAACACAACAAUGUUUUUCUUCAG-GCAGAUCA
..........((((((.(((.((((.(((....))))))).)))...................((.((.((((((......)))))).)).)))-)))))... ( -25.00)
>DroEre_CAF1 21742 102 + 1
UUAUAAAAUUUCUGCCAUCAACCAAAUAGGCAACUGGUGGCUAAAAAAGUUCUUCAUAUGUACUGUAGCCAAACAGAAAAAUGUUUUUCACCAG-GCAGAUCA
..........((((((...........((....))((((((((....(((.(.......).))).)))))(((((......)))))...))).)-)))))... ( -26.10)
>DroYak_CAF1 20996 97 + 1
UUAUAAACAUUCUGCCAUCAACCACAUAGGCAACUGGUGGCUA----AGUUUUUCAUAAGCGCUAUAGCACAACACA-AAAUGUUUUUCUUCAG-GCAGAUCA
..........((((((......(((.(((....))))))((((----.((((.....))))....))))........-...............)-)))))... ( -22.30)
>consensus
UUAUAAAGUUUUUGCCAUCAACCACAUAGGCAACUAGUGGCUGAAAAAUUUCUUCAUAAGUGCUGUAGCAAAACACAACAAUGUUUUUCUUCAG_GCAGAUCA
..........(((((..(((.((((.(((....))))))).)))..................(((.((.((((((......)))))).)).))).)))))... (-15.34 = -17.06 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:18 2006