Locus 8172

Sequence ID 3R_DroMel_CAF1
Location 21,978,340 – 21,978,444
Length 104
Max. P 0.845114
window13141

overview

Window 1

Location 21,978,340 – 21,978,444
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 87.12
Mean single sequence MFE -20.68
Consensus MFE -16.81
Energy contribution -16.88
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -1.87
Structure conservation index 0.81
SVM decision value 0.77
SVM RNA-class probability 0.845114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21978340 104 - 27905053
GAAAUACUUAUAAAGACCGCAGGUCAGUUGAGGAAUACUUUUAUUUUACCUAACAAAGACUGUAUUUGUCAACAAUUUUUCAUAGUUAAUGAGUUUCUCAGGCC
((...((((((...((((...)))).(((((.((((((.......................)))))).)))))...............))))))...))..... ( -20.40)
>DroSec_CAF1 17812 104 - 1
AAAAUAUUUAUGGAGACCACAGGCCAGUUGAGAAAUACAUAUAUUUUACCUAACAAAGACUGUAUUUGUCAACAAUUUUUCAUAGUUAAUGAGUUUCCCAGUCU
...........((((((.........(((((.(((((((....(((........)))...))))))).)))))......((((.....))))))))))...... ( -19.70)
>DroEre_CAF1 17637 101 - 1
AAAAUAUUUAUGGAGACCACAGGUCAGUUGAGGAAUACAUUUCAUUCAACUAACAA---CUGUAUUUGUCAACAAUUUUUCAUAGUUAAUGAGCUUCCCAUGCC
........(((((.((((...)))).(((((.(((((((.................---.))))))).))))).....(((((.....)))))....))))).. ( -21.47)
>DroYak_CAF1 18625 101 - 1
AAAAUAUUUAUGGAGACCACAGGUCAGUUGAGAAAUACACUUCUUUCACCUAACAA---CAGUAUUUGUCAACAAUUUUUCAUAGCUAAUGAGCUUCCCAUGCC
........(((((.((((...)))).(((((.((((((..................---..)))))).)))))..........((((....))))..))))).. ( -21.15)
>consensus
AAAAUAUUUAUGGAGACCACAGGUCAGUUGAGAAAUACAUUUAUUUCACCUAACAA___CUGUAUUUGUCAACAAUUUUUCAUAGUUAAUGAGCUUCCCAGGCC
.......(((((((((((...)))).(((((.((((((.......................)))))).))))).....)))))))................... (-16.81 = -16.88 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:15 2006