Locus 8169

Sequence ID 3R_DroMel_CAF1
Location 21,967,711 – 21,967,814
Length 103
Max. P 0.607123
window13135

overview

Window 5

Location 21,967,711 – 21,967,814
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.77
Mean single sequence MFE -28.18
Consensus MFE -18.95
Energy contribution -19.59
Covariance contribution 0.65
Combinations/Pair 1.44
Mean z-score -1.15
Structure conservation index 0.67
SVM decision value 0.15
SVM RNA-class probability 0.607123
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21967711 103 - 27905053
AGCCGUUCCUCCAACUUUCAGACCUGUCAGCAAC-CGCACUUUGCUGAUGAAAGGCUU-AAAAGGUAUGGAUGUUGGUCCCGUUUUUCGGACAAAACCCACCC---------------AA
.((((..(.(((((((((.((.(((((((((((.-......))))))))...))))).-..))))).)))).).)))).(((.....))).............---------------.. ( -25.20)
>DroSec_CAF1 7109 101 - 1
AGUCGUUCCUCCAGCUUUCAGACCUGUCAGCAAC-CGCACUUUGCUGAUGAAAGGCUU-AAAAGGUAUGGAUGUUGGUCCCGUU--UCGGGCAAAACCCACCC---------------AA
..........(((((.((((.((((((((((((.-......)))))))).........-...)))).)))).))))).......--..(((.....)))....---------------.. ( -25.60)
>DroSim_CAF1 7112 101 - 1
AGUCGUUCCUCCAGCUUUCAGACCUGUCAGCAAC-CGCACUUUGCUGAUGAAAGGCUU-AAAAGGUAUGGAUGUUGGUCCCGUU--UCGGGCAAAACCCACCC---------------AA
..........(((((.((((.((((((((((((.-......)))))))).........-...)))).)))).))))).......--..(((.....)))....---------------.. ( -25.60)
>DroEre_CAF1 7051 99 - 1
UGUCUUUCCUCCAGCUUUCAGACCUGUCAGCAAC-CGCACUUUGCUGAUGAAAGGCUU-AAAAGGUUUGAAUGUUGGUCCUGUU--UCGGGCAAAGC--CCCU---------------CA
..........(((((.(((((((((((((((((.-......)))))))).........-...))))))))).))))).......--..((((...))--))..---------------.. ( -31.00)
>DroYak_CAF1 7789 94 - 1
UGUCUUUCCUUCAGCUG-------UGUCAGCAAC-CGCACUUUGCUGAUGAAAGGCUU-AAAAGGUAUGGAUGUUGGUCCUGUU--UUAGGCAAAACACCCCC---------------AA
.(((((((..(((((.(-------(((.......-.))))...))))).)))))))..-....((...((.((((...((((..--.))))...)))).))))---------------.. ( -27.40)
>DroAna_CAF1 13484 117 - 1
AGC-CUACCUUUCGCUUUGGGGACUGUCAACAAAGGGUACUCUGCCGAUGAAAGGUGAAAAAAGGUGUAGAUGCUGGUCCCAUU--UUGGGCAAUGUACUCACAACAGAAACUGGCAACA
.((-(((((((((((((((..(.....)..)))))(((.....)))..))))))))).......(((.((.(((..((((....--..))))...))))))))..........))).... ( -34.30)
>consensus
AGUCGUUCCUCCAGCUUUCAGACCUGUCAGCAAC_CGCACUUUGCUGAUGAAAGGCUU_AAAAGGUAUGGAUGUUGGUCCCGUU__UCGGGCAAAACCCACCC_______________AA
..........(((((.((((.((((((((((((........)))))))).............)))).)))).))))).((((.....))))............................. (-18.95 = -19.59 +   0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:09 2006