Locus 8168

Sequence ID 3R_DroMel_CAF1
Location 21,965,780 – 21,965,896
Length 116
Max. P 0.946956
window13134

overview

Window 4

Location 21,965,780 – 21,965,896
Length 116
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 94.08
Mean single sequence MFE -31.39
Consensus MFE -27.83
Energy contribution -27.47
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -1.83
Structure conservation index 0.89
SVM decision value 1.37
SVM RNA-class probability 0.946956
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21965780 116 + 27905053
UCAUCGAUUUCUU--CGCCAGGGAAUCGAAGUGAAAUCGGAGCUGGCACUAACCAGGCUACCGGAAUAUUCAAGUAAUGGCUGGCAAUAAAAAAACGGAGCCAUAAAAUGGCGAAGAG
.........((((--(((((.......(((......((((((((((......))).))).))))....))).....((((((................))))))....))))))))). ( -33.89)
>DroSec_CAF1 5123 115 + 1
UCAUCGAUUUCUU--CGCCGGGGAAUCGAAGUGAAAUCGGAGCUGGCACUAACCAGGCUACCGGAAUAUUCAAGUAAUGGCUGGCAAUAAA-AAACGGAGCCAUAAAAUGGCGAAGAG
.........((((--(((((.......(((......((((((((((......))).))).))))....))).....((((((.........-......))))))....))))))))). ( -33.26)
>DroSim_CAF1 5127 115 + 1
UCAUCGAUUUCUU--CGCAGGGGAAUCGAAGUGAAAUCGGAGCUGGCACUAACCAGGCUACCGGAAUAUUCAAGUAAUGGCUGGCAAUAAA-AAACGGAGCCAUAAAAUGGCGAAGAG
.........((((--(((.........(((......((((((((((......))).))).))))....))).....((((((.........-......))))))......))))))). ( -29.66)
>DroEre_CAF1 5073 115 + 1
UCAUCGAUUUCUU--CGUCAGGGAAUCGAAGUGAAAUCGGAGCUGGCACUAACCAGGCUACCGGAAUAUUCAAGUAAUGGCUGGCAAUAAA-AAACGGAGCCAUAAAACGGCGAAGAG
.........((((--((((........(((......((((((((((......))).))).))))....))).....((((((.........-......)))))).....)))))))). ( -30.56)
>DroYak_CAF1 5785 115 + 1
UCAUCGAUUUCUU--CGCCAGGGAAUCGAAGUGAAAUCGGAGCUGGCACUAACCAGGCUACCGGAAUAUUCAAGUAAUGGCUGGCAAUAAA-AAACGAAGUCAUAAAAUGGCGAAGAG
.........((((--(((((.......(((......((((((((((......))).))).))))....))).....((((((.........-......))))))....))))))))). ( -31.96)
>DroAna_CAF1 6694 115 + 1
UCAUCGAUUUCUCGCUGCCGGAGAAUCGAAGUGAAAUCGGAGCUGGCACUAACCAGGCUACCGGAAUAUUCAAGUAAUGGCUUGCAAUAAA-AAA-GGAGCCAUAAAAAAA-ACAGAG
...(((((((..((....))..)))))))..((((.((((((((((......))).))).))))....))))....(((((((........-...-.))))))).......-...... ( -29.00)
>consensus
UCAUCGAUUUCUU__CGCCAGGGAAUCGAAGUGAAAUCGGAGCUGGCACUAACCAGGCUACCGGAAUAUUCAAGUAAUGGCUGGCAAUAAA_AAACGGAGCCAUAAAAUGGCGAAGAG
...((((((((((......))))))))))..((((.((((((((((......))).))).))))....))))....((((((................)))))).............. (-27.83 = -27.47 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:08 2006