Locus 8165

Sequence ID 3R_DroMel_CAF1
Location 21,959,763 – 21,959,861
Length 98
Max. P 0.796403
window13129

overview

Window 9

Location 21,959,763 – 21,959,861
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 95.31
Mean single sequence MFE -21.94
Consensus MFE -17.79
Energy contribution -17.99
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.81
SVM decision value 0.60
SVM RNA-class probability 0.796403
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21959763 98 + 27905053
AUCUCAUUAUUGUGGUUUAUUUUAAGCAAUCGAUGAACCAGUUUUCAACUUGGCUACUGUAUCGUCUCAUUCAACUACUUGCCGGCUUUAUUGAGGUU
((((((.((..(((((...............(((((..((((..((.....))..))))..)))))..............))).))..)).)))))). ( -19.45)
>DroSec_CAF1 65472 98 + 1
AUCUCAAUAUUGUGGUUUAUUUUAAGCGUUCGAUGAACCAGUUUUCAACUUGGCUACUGUAUCGUCCCAUUCAACUACUUGCCGGCUUUAUUGAGGUU
(((((((((..(((((...............(((((..((((..((.....))..))))..)))))..............))).))..))))))))). ( -22.65)
>DroSim_CAF1 74886 98 + 1
AUCUCAAUAUUGUGGUUUAUUUUAAGCGUUCGAUGAACCAGUUUUCAACUUGGCUACUGUAUCGUCCCAUUCAACUACUUGCCGGCUUUAUUGAGGUU
(((((((((..(((((...............(((((..((((..((.....))..))))..)))))..............))).))..))))))))). ( -22.65)
>DroEre_CAF1 67716 98 + 1
AUCUCAUUAUUGUGGUUUAUGUUAAACGAUCGAUGAACCAGUUUUCAACUUGGCUACUGUUUCGUCUUGUUCAACUACUUGCCGGCUUUAUUGAGGUU
((((((.((..(((((....(((.(((((..((((((.((((..((.....))..)))).))))))))))).))).....))).))..)).)))))). ( -26.60)
>DroYak_CAF1 67270 98 + 1
AUCUCAUUAUUUUGGUUUAUUUUAAGCGAUCGAUGAACCAGUUUUCAACUUGGCUACUGUAUCGUCUCAUUCAACUACUUGCCGGCUUUAUUGAGGUU
((((((.((..(((((...............(((((..((((..((.....))..))))..)))))..............)))))...)).)))))). ( -18.35)
>consensus
AUCUCAUUAUUGUGGUUUAUUUUAAGCGAUCGAUGAACCAGUUUUCAACUUGGCUACUGUAUCGUCUCAUUCAACUACUUGCCGGCUUUAUUGAGGUU
((((((.((..(((((...............(((((..((((..((.....))..))))..)))))..............))).))..)).)))))). (-17.79 = -17.99 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:04 2006