Locus 8163

Sequence ID 3R_DroMel_CAF1
Location 21,957,329 – 21,957,424
Length 95
Max. P 0.651525
window13125

overview

Window 5

Location 21,957,329 – 21,957,424
Length 95
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 87.56
Mean single sequence MFE -19.85
Consensus MFE -13.78
Energy contribution -14.30
Covariance contribution 0.52
Combinations/Pair 1.11
Mean z-score -1.99
Structure conservation index 0.69
SVM decision value 0.25
SVM RNA-class probability 0.651525
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21957329 95 - 27905053
ACUUCAUGAACGACCUUGUCAAGG---CAACAAGCAUACAAAUCUGAGUUGAUACAAAAAAUGCUGGCGAUUUAACGCUCCGCAGCCAAAGACAACAA
...............(((((..((---(.............(((......)))........(((.((((......))).).))))))...)))))... ( -16.70)
>DroSec_CAF1 63104 97 - 1
ACUUCAUAAACGACCUUGUCAGUGAAACAACAAGCUCACAAAUCUGAGUUGAUACAAA-AACGCUGGCGAUUUAACGCUCGACAGCCAAAGACAACAA
...............(((((.((.........((((((......))))))........-.))((((.(((........))).))))....)))))... ( -19.07)
>DroSim_CAF1 72540 97 - 1
ACUUCAUAAACGACCUUGUCAGUGCAACAACAAGCUCACAAAUCUGAGUUGAUACAAA-AACGCUGGCGUUUUAACGCUCGACAGCCAAAGACAACAA
...............(((((.((.........((((((......))))))........-.))((((((((....))))....))))....)))))... ( -19.07)
>DroEre_CAF1 65306 94 - 1
ACUUGAGAAACGACCUUGCCAUGG---CAACCAGCUCAGAAAUCUGAGUUCAUACAAA-AACGCUGACGAUUUAACACUCGGCAGCCAAAGACAACAA
..(((..........((((....)---)))..(((((((....)))))))....))).-...((((.(((........))).))))............ ( -20.20)
>DroYak_CAF1 64843 94 - 1
ACUUGAUAAACGACCUUGCAAAGG---CAACUAGCUCAGAAAUCUGAGUUGAUACAAA-AACGCUGGCGAUUUAACGCUCGGCAGCAAAAUACAACAA
...............((((..((.---...))(((((((....)))))))........-...(((((((......))).)))).)))).......... ( -24.20)
>consensus
ACUUCAUAAACGACCUUGUCAAGG___CAACAAGCUCACAAAUCUGAGUUGAUACAAA_AACGCUGGCGAUUUAACGCUCGGCAGCCAAAGACAACAA
...............(((((............((((((......))))))............((((.(((........))).))))....)))))... (-13.78 = -14.30 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:00 2006