| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,956,509 – 21,956,604 |
| Length | 95 |
| Max. P | 0.966604 |
| Location | 21,956,509 – 21,956,604 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.82 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -19.07 |
| Energy contribution | -20.02 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.966604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21956509 95 + 27905053 AAGCGUUCAAAGACCAUCUCGGCUGCACAGAUU-UGACAUGGAGUCUGUCAUCGAGUUUGUCACGAAGG---------UAUGGAUGUUCUGAAAAACGCUGAAU-------A .((((((...(((.((((((((.((.(((((((-(......)))))))))))))).......((....)---------)...)))).)))....))))))....-------. ( -27.30) >DroSec_CAF1 62289 95 + 1 AAGCGUUGAAAGACCGUCUCGGCUGCACAGAUU-UGACAUGGAGUCUGUCAUCGAGUUGGUCACGAAGG---------UAUGGGUGUUCUGAAAAACGCUGAAA-------A .((((((....(((((.(((((.((.(((((((-(......))))))))))))))).)))))((....)---------)...............))))))....-------. ( -32.40) >DroSim_CAF1 71737 95 + 1 AAGCGUUCAAAGACCGUCUCGGCUGCACAGAUU-UGACAUGGAGUCUGUCAUCGAGUUGGUCACGAAGG---------UAUGGGUGUUCUGAAAAACGCUGAAA-------A .((((((....(((((.(((((.((.(((((((-(......))))))))))))))).)))))((....)---------)...............))))))....-------. ( -31.80) >DroEre_CAF1 64400 95 + 1 AAGCGUUCAAAGACCGUCUCGGCUGCACAGAUU-UGACAUGGAGUCUGUCAUCGAGUCGGUCACGAAGG---------CAUGGAUGUUCUGAAAACCGUUGAAA-------A .((((((((..(((((.(((((.((.(((((((-(......))))))))))))))).))))).(....)---------..))))))))................-------. ( -32.70) >DroYak_CAF1 63943 95 + 1 AAGUGUUCAAAGACCGUCUCGGCUGCACAGAUU-UGACAUGGAGUCUGUCAUCUAGUCGGUCACGAAGG---------UAUGGAUGUUCUGAAAAACGCUGAAA-------A .((((((....(((((.((.((.((.(((((((-(......)))))))))).)))).)))))..(((.(---------(....)).))).....))))))....-------. ( -27.40) >DroMoj_CAF1 86300 103 + 1 UCGCGUUCAAAGACCGUCUCAA------UAUUUCUGAUGUUGCGGCUGUCA---ACUCAAUCAUAAAAAUUAUGAUUAUUGGGCUGUUCCCAGUAACGUGCGGCGCACUCCG ..(((((....(((.(((.(((------((((...))))))).))).))).---................((((.((((((((.....)))))))))))).)))))...... ( -28.00) >consensus AAGCGUUCAAAGACCGUCUCGGCUGCACAGAUU_UGACAUGGAGUCUGUCAUCGAGUCGGUCACGAAGG_________UAUGGAUGUUCUGAAAAACGCUGAAA_______A .((((((....(((((.(((((.((.(((((((.........)))))))))))))).)))))..................(((.....)))...))))))............ (-19.07 = -20.02 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:59 2006