Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,955,473 – 21,955,574 |
Length | 101 |
Max. P | 0.965875 |
Location | 21,955,473 – 21,955,574 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.41 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -13.82 |
Energy contribution | -16.74 |
Covariance contribution | 2.92 |
Combinations/Pair | 1.18 |
Mean z-score | -3.04 |
Structure conservation index | 0.45 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.965875 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21955473 101 + 27905053 GAUUUGACGUAUUUAUUCGCAUUGCUCGGCAUGUUGCGGCAACAUUUUAGGCAACAUCCAAGAAAUAUUGCCAGCUUCUGGG---CUGAGCGUGUAAAUUACAU ........(((...(((..(((.(((((((..(..(((((((.(((((.((......))..))))).))))).))..)...)---)))))))))..)))))).. ( -29.00) >DroSec_CAF1 61270 101 + 1 GAUUUAACGUAUUUAUUCGCAUUGCUCGGCAUGUUGCGGCAACAUUUUGGGCAACAUGCAAAAAAUAUUGCCAGCUUCUGGG---CUGAGCGUGUAAAUUACAU ........(((...(((..(((.(((((((..(..(((((((.(((((..((.....))..))))).))))).))..)...)---)))))))))..)))))).. ( -33.00) >DroSim_CAF1 70694 101 + 1 GAUUUAACGUAUUUAUUCGCAUUGCUCGGCAUGUUGCGGCAACAUUUUGGGCAACAUGCAAAAAAUAUUGCCAGCUUCUGGG---CUGAGCGUGUAAAUUAUAU ........((((..(((..(((.(((((((..(..(((((((.(((((..((.....))..))))).))))).))..)...)---)))))))))..))).)))) ( -32.60) >DroEre_CAF1 63345 100 + 1 GAUUUUUCGUAUUUAUUAGCGUUGCUUGGAAUGUUGCUGCAACAUUCUGGGCAACAUGAAAAAUAUAUUGCUAGCUUAUGGG---CUGAGCAUGUAAAUUAC-U .(((((((((........))((((((..((((((((...))))))))..))))))..)))))))....((((((((....))---)).))))..........-. ( -34.40) >DroYak_CAF1 62900 88 + 1 GAUUUUUCGUAUAC----------------AUGUUCCGGCAACAUUUCAGGCAACAUUUAAAAACCAUUGCCAGCUUAUGGGCGGCUGAGCAUGUAAGUUACAU ........((((((----------------((((((.(((.........(((((.............))))).(((....))).))))))))))))...))).. ( -23.12) >consensus GAUUUAACGUAUUUAUUCGCAUUGCUCGGCAUGUUGCGGCAACAUUUUGGGCAACAUGCAAAAAAUAUUGCCAGCUUCUGGG___CUGAGCGUGUAAAUUACAU ........((((((((.(((.((((((((.((((((...)))))).))))))))................(((.....)))........))).))))).))).. (-13.82 = -16.74 + 2.92)
Location | 21,955,473 – 21,955,574 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.41 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -11.72 |
Energy contribution | -13.16 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.06 |
Mean z-score | -2.19 |
Structure conservation index | 0.49 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21955473 101 - 27905053 AUGUAAUUUACACGCUCAG---CCCAGAAGCUGGCAAUAUUUCUUGGAUGUUGCCUAAAAUGUUGCCGCAACAUGCCGAGCAAUGCGAAUAAAUACGUCAAAUC ((((((((..((.((((.(---(...(..((.((((((((((...((......))..))))))))))))..)..)).))))..))..)))...)))))...... ( -25.60) >DroSec_CAF1 61270 101 - 1 AUGUAAUUUACACGCUCAG---CCCAGAAGCUGGCAAUAUUUUUUGCAUGUUGCCCAAAAUGUUGCCGCAACAUGCCGAGCAAUGCGAAUAAAUACGUUAAAUC ((((((((..((.((((.(---(...(..((.(((((((((((..((.....))..)))))))))))))..)..)).))))..))..)))...)))))...... ( -27.10) >DroSim_CAF1 70694 101 - 1 AUAUAAUUUACACGCUCAG---CCCAGAAGCUGGCAAUAUUUUUUGCAUGUUGCCCAAAAUGUUGCCGCAACAUGCCGAGCAAUGCGAAUAAAUACGUUAAAUC .....(((..((.((((.(---(...(..((.(((((((((((..((.....))..)))))))))))))..)..)).))))..))..))).............. ( -25.90) >DroEre_CAF1 63345 100 - 1 A-GUAAUUUACAUGCUCAG---CCCAUAAGCUAGCAAUAUAUUUUUCAUGUUGCCCAGAAUGUUGCAGCAACAUUCCAAGCAACGCUAAUAAAUACGAAAAAUC .-(((.((((..((((.((---(......))))))).............(((((...((((((((...))))))))...))))).....)))))))........ ( -22.60) >DroYak_CAF1 62900 88 - 1 AUGUAACUUACAUGCUCAGCCGCCCAUAAGCUGGCAAUGGUUUUUAAAUGUUGCCUGAAAUGUUGCCGGAACAU----------------GUAUACGAAAAAUC .((((...((((((.((.(((((......)).)))..((((.....((((((......)))))))))))).)))----------------)))))))....... ( -17.80) >consensus AUGUAAUUUACACGCUCAG___CCCAGAAGCUGGCAAUAUUUUUUGCAUGUUGCCCAAAAUGUUGCCGCAACAUGCCGAGCAAUGCGAAUAAAUACGUAAAAUC .............((((...............((((((((.......))))))))....((((((...))))))...))))....................... (-11.72 = -13.16 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:58 2006