Locus 8160

Sequence ID 3R_DroMel_CAF1
Location 21,952,511 – 21,952,627
Length 116
Max. P 0.884773
window13121

overview

Window 1

Location 21,952,511 – 21,952,627
Length 116
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 79.91
Mean single sequence MFE -22.45
Consensus MFE -13.14
Energy contribution -15.11
Covariance contribution 1.97
Combinations/Pair 1.22
Mean z-score -2.36
Structure conservation index 0.59
SVM decision value 0.93
SVM RNA-class probability 0.884773
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21952511 116 - 27905053
AUAUCCAUUUCUUCCUCCUCACCUCCAUCAUAUGAGAAACUGACCUUCUCAUCGACGUCGAAGAUUUCUAAAACACUUUUUCCACAUUUCGAAGUUCGGGAUAUGAGAUCCAUUUC
.................((((..(((.....(((((((.......)))))))(((..((((((......(((.....)))......))))))...))))))..))))......... ( -19.40)
>DroSec_CAF1 58289 116 - 1
GUUUCCAUUUCUUCCUCCUCACCUCCAUCAUAUGAGAAACUGACCUUCUCAUCGACGUCGAAUAUCUCUAAAACACUUUUGCCACAUUUCGAUGUUCGGGAUAUGAGAUCCAUUUC
.................((((..(((.....(((((((.......)))))))((((((((((......((((.....))))......))))))).))))))..))))......... ( -23.60)
>DroSim_CAF1 67717 116 - 1
GUUUCCAUUUCUUCCUCCUCACCUCCAUCAUAUGAGAAACUGACCUUCUCAUCGACGUCGAAUAUCUCUAAAACACUUUUGCCACAUUUCGAUGUUCGGGAUAUGAGAUCCAUUUC
.................((((..(((.....(((((((.......)))))))((((((((((......((((.....))))......))))))).))))))..))))......... ( -23.60)
>DroEre_CAF1 60323 113 - 1
AUUUCCAUU---UCCUCCUCACCUCCAACAGAUGAGAAACUGACCUUCUCGUCCACGUCGAAAAUCUCUAAAACACUUUUUCCACAUUUCGAUGUGCGGGAUAUGAGAUCGAUUUC
.........---.....((((..(((....((((((((.......))))))))((((((((((......(((.....)))......))))))))))..)))..))))......... ( -27.10)
>DroWil_CAF1 79761 110 - 1
AAUGUCAAACCCUCACCCUCUUCUUCCUCGGCCGAGAAACUCAAUUCCUCUUCAUAGUCAAAGAUUUC------AAUUUUACGACAUCGCAGAGUCCGUGUGAUUAGAUCAAUGCG
..................(((...(((.(((..(((...))).....((((.(...(((.(((((...------.)))))..)))...).)))).))).).))..)))........ ( -11.60)
>DroYak_CAF1 59876 113 - 1
AUAUCCACU---UCCUCCUCACCUCCAUCGGAUGAGAAACUGACCUUCUCAUCAACGUCGAAAAUCUCUAAAACACUUUUUCCACAUUUCGAUGUUCGGGAGAUGAGAUCGAUUUC
.........---.....((((.((((....((((((((.......))))))))((((((((((......(((.....)))......))))))))))..)))).))))......... ( -29.40)
>consensus
AUUUCCAUUUCUUCCUCCUCACCUCCAUCAGAUGAGAAACUGACCUUCUCAUCGACGUCGAAAAUCUCUAAAACACUUUUUCCACAUUUCGAUGUUCGGGAUAUGAGAUCCAUUUC
.................((((..(((.....(((((((.......))))))).(((((((((.........................)))))))))..)))..))))......... (-13.14 = -15.11 +   1.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:56 2006