| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,931,631 – 21,931,728 |
| Length | 97 |
| Max. P | 0.599651 |
| Location | 21,931,631 – 21,931,728 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 86.97 |
| Mean single sequence MFE | -27.44 |
| Consensus MFE | -19.50 |
| Energy contribution | -19.82 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21931631 97 - 27905053 ----UCGACAUUGCGAGGUCUUGCUGUACAA-UAUGCAUAUAUUUUUUCUGCUCGAAGACCCACUGUCUUGACAGAUACAUUUUCCGAGCGACCUUUCGCGC ----........((((((((.(((.......-...)))............(((((((((....((((....)))).....)))).)))))))))..)))).. ( -24.50) >DroSec_CAF1 46236 97 - 1 ----UCGACUUCGCGAGGUCUUGCUGUACAG-UAUGCAUAUAUUUUUUCUGUUCGAAGACCCACUGUCUUGAAAGAUACAUUUUCCGAGCGACCUUUCGCGC ----.......(((((((((.((((....))-))................((((((((((.....)))))(((((.....))))))))))))))..))))). ( -23.70) >DroSim_CAF1 55648 97 - 1 ----UCGACUUUGCGAGGUCUUGCUGUACAG-UAUGCAUAUAUUUUUUCUGCUCGAAGACCCACUGUCUUGGAAGAUACAUUUUCCGAGCGACCUUUCGCGC ----........((((((((.((((....))-))................((((.(((((.....)))))((((((....))))))))))))))..)))).. ( -28.20) >DroEre_CAF1 47856 101 - 1 GACCUCGAUUUAACGAGGUCCUGCUGUACAGCUAUGCAUAUAUUUUUGCCGCUCGAGGACCCACUGUCU-GUGGGAUUCAUUUUCCGAGCGACCUUUCUCGC (((((((......)))))))..(((....)))...(((........)))((((((..(((((((.....-)))))......))..))))))........... ( -34.20) >DroYak_CAF1 47540 97 - 1 ----UUCCCUUCAUGAGGUCCUGCUGUACAG-UGUGCAUAUAUAUUUGCCGCUCGAGGACCCACUGUCUUGGAAGAUACAUUUUCCGAGCGACCUUUCGCGC ----.........((.((((((.(.....((-((.(((........))))))).))))))))).....((((((((....))))))))((((....)))).. ( -26.60) >consensus ____UCGACUUCGCGAGGUCUUGCUGUACAG_UAUGCAUAUAUUUUUUCUGCUCGAAGACCCACUGUCUUGAAAGAUACAUUUUCCGAGCGACCUUUCGCGC ...........(((((((((.(((...........)))............((((((((((.....)))))....((.......)))))))))))..))))). (-19.50 = -19.82 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:53 2006