Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,930,738 – 21,930,893 |
Length | 155 |
Max. P | 0.966438 |
Location | 21,930,738 – 21,930,855 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -34.87 |
Consensus MFE | -29.17 |
Energy contribution | -28.73 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -3.92 |
Structure conservation index | 0.84 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.947876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21930738 117 + 27905053 ACACUGAACGUAAAAGUGUUGACAAACAAAUGUGUUCGCCGCACGAUCAUUAACCGCAGAAUUGAAAUACAAUCUGCGGUUUUUGAAGUG--UUUAGCCAGCAAUAUUGUGGUUUAUUU (((((.........)))))....((((.((((((((.((.((((..(((..(((((((((.(((.....))))))))))))..))).)))--)...)).))).)))))...)))).... ( -34.50) >DroSec_CAF1 45326 119 + 1 ACACUGAACAUAAAAGUGUUGACAAAUAAAUCUGUUCACACCACGAUCAUUAACCGCAGAAUUAAAUUACAAUCUGCGGUUUUUGAAGUGGGGUUAGUCAGCAAUAUUAUGGUUUAUUU ........(((((...(((((((.........((....))((((..(((..(((((((((............)))))))))..))).)))).....)))))))...)))))........ ( -36.30) >DroSim_CAF1 54757 119 + 1 ACACUGAACGUAAAAGUGUUGACAAAUAAAUCUAUUCACACCACGAUUAUUAACCGCAGAAUUGAAUUACAAUCUGCGGUUUUUGAAGUGGGGUUAGCCAGCAAUAUUAUGGUUUAUUU (((((.........)))))....(((((((((........((((..(((..(((((((((.(((.....))))))))))))..))).))))((....))...........))))))))) ( -33.80) >consensus ACACUGAACGUAAAAGUGUUGACAAAUAAAUCUGUUCACACCACGAUCAUUAACCGCAGAAUUGAAUUACAAUCUGCGGUUUUUGAAGUGGGGUUAGCCAGCAAUAUUAUGGUUUAUUU ........(((((...(((((.(.((((....))))....((((..(((..(((((((((.(((.....))))))))))))..))).)))).....).)))))...)))))........ (-29.17 = -28.73 + -0.44)
Location | 21,930,738 – 21,930,855 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -24.28 |
Energy contribution | -24.07 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.09 |
Mean z-score | -3.06 |
Structure conservation index | 0.81 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887400 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21930738 117 - 27905053 AAAUAAACCACAAUAUUGCUGGCUAAA--CACUUCAAAAACCGCAGAUUGUAUUUCAAUUCUGCGGUUAAUGAUCGUGCGGCGAACACAUUUGUUUGUCAACACUUUUACGUUCAGUGU .................((((((((((--(((.(((..((((((((((((.....))).)))))))))..)))..))).((((((((....))))))))......)))).).))))).. ( -32.20) >DroSec_CAF1 45326 119 - 1 AAAUAAACCAUAAUAUUGCUGACUAACCCCACUUCAAAAACCGCAGAUUGUAAUUUAAUUCUGCGGUUAAUGAUCGUGGUGUGAACAGAUUUAUUUGUCAACACUUUUAUGUUCAGUGU .................(((((.......(((.(((..((((((((((((.....))).)))))))))..)))..)))((((..(((((....)))))..))))........))))).. ( -31.00) >DroSim_CAF1 54757 119 - 1 AAAUAAACCAUAAUAUUGCUGGCUAACCCCACUUCAAAAACCGCAGAUUGUAAUUCAAUUCUGCGGUUAAUAAUCGUGGUGUGAAUAGAUUUAUUUGUCAACACUUUUACGUUCAGUGU .................(((((................((((((((((((.....))).)))))))))......((((((((..(((((....)))))..)))))...))).))))).. ( -27.10) >consensus AAAUAAACCAUAAUAUUGCUGGCUAACCCCACUUCAAAAACCGCAGAUUGUAAUUCAAUUCUGCGGUUAAUGAUCGUGGUGUGAACAGAUUUAUUUGUCAACACUUUUACGUUCAGUGU ...................((((.....((((.(((..((((((((((((.....))).)))))))))..)))..)))).(((((....)))))..))))(((((.........))))) (-24.28 = -24.07 + -0.22)
Location | 21,930,777 – 21,930,893 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 90.37 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -25.29 |
Energy contribution | -26.30 |
Covariance contribution | 1.01 |
Combinations/Pair | 1.08 |
Mean z-score | -3.27 |
Structure conservation index | 0.75 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21930777 116 + 27905053 CGCACGAUCAUUAACCGCAGAAUUGAAAUACAAUCUGCGGUUUUUGAAGUG--UUUAGCCAGCAAUAUUGUGGUUUAUUUUUAUCACGACAUAGCUAUUUUUGGAGUAAUUAGGCACA .((((..(((..(((((((((.(((.....))))))))))))..))).)))--)...((((((.((.(((((((........))))))).)).))).......((....)).)))... ( -37.40) >DroSec_CAF1 45365 117 + 1 ACCACGAUCAUUAACCGCAGAAUUAAAUUACAAUCUGCGGUUUUUGAAGUGGGGUUAGUCAGCAAUAUUAUGGUUUAUUUUUAACACGAUAAAGCUAUUUUUGGAGUAUGUG-GCACA .((((..(((..(((((((((............)))))))))..))).)))).....((((((..((..((((((((((........))).)))))))...))..))...))-))... ( -30.50) >DroSim_CAF1 54796 117 + 1 ACCACGAUUAUUAACCGCAGAAUUGAAUUACAAUCUGCGGUUUUUGAAGUGGGGUUAGCCAGCAAUAUUAUGGUUUAUUUUUAACACGACAAAGCUAUUUUUGGAGUAAGUA-GCACA .((((..(((..(((((((((.(((.....))))))))))))..))).))))(((.(((((.........))))).)))..............(((((((.......)))))-))... ( -33.50) >consensus ACCACGAUCAUUAACCGCAGAAUUGAAUUACAAUCUGCGGUUUUUGAAGUGGGGUUAGCCAGCAAUAUUAUGGUUUAUUUUUAACACGACAAAGCUAUUUUUGGAGUAAGUA_GCACA .((((..(((..(((((((((.(((.....))))))))))))..))).))))......((((.((((((((.(((((....))).)).))))...)))).)))).............. (-25.29 = -26.30 + 1.01)
Location | 21,930,777 – 21,930,893 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 90.37 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -24.63 |
Energy contribution | -24.63 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -3.06 |
Structure conservation index | 0.88 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21930777 116 - 27905053 UGUGCCUAAUUACUCCAAAAAUAGCUAUGUCGUGAUAAAAAUAAACCACAAUAUUGCUGGCUAAA--CACUUCAAAAACCGCAGAUUGUAUUUCAAUUCUGCGGUUAAUGAUCGUGCG ...(((..(((........)))(((.((((.(((............))).)))).))))))....--(((.(((..((((((((((((.....))).)))))))))..)))..))).. ( -27.60) >DroSec_CAF1 45365 117 - 1 UGUGC-CACAUACUCCAAAAAUAGCUUUAUCGUGUUAAAAAUAAACCAUAAUAUUGCUGACUAACCCCACUUCAAAAACCGCAGAUUGUAAUUUAAUUCUGCGGUUAAUGAUCGUGGU ...((-(((............((((..(((..((............))..)))..))))............(((..((((((((((((.....))).)))))))))..)))..))))) ( -28.60) >DroSim_CAF1 54796 117 - 1 UGUGC-UACUUACUCCAAAAAUAGCUUUGUCGUGUUAAAAAUAAACCAUAAUAUUGCUGGCUAACCCCACUUCAAAAACCGCAGAUUGUAAUUCAAUUCUGCGGUUAAUAAUCGUGGU ...((-(((............(((((..((.((((((...........)))))).)).))))).............((((((((((((.....))).))))))))).......))))) ( -27.90) >consensus UGUGC_UACUUACUCCAAAAAUAGCUUUGUCGUGUUAAAAAUAAACCAUAAUAUUGCUGGCUAACCCCACUUCAAAAACCGCAGAUUGUAAUUCAAUUCUGCGGUUAAUGAUCGUGGU .....................((((..(((.(((............))).)))..)))).......((((.(((..((((((((((((.....))).)))))))))..)))..)))). (-24.63 = -24.63 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:52 2006