Locus 8156

Sequence ID 3R_DroMel_CAF1
Location 21,920,957 – 21,921,061
Length 104
Max. P 0.626605
window13113

overview

Window 3

Location 21,920,957 – 21,921,061
Length 104
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 82.79
Mean single sequence MFE -31.32
Consensus MFE -20.48
Energy contribution -21.36
Covariance contribution 0.88
Combinations/Pair 1.08
Mean z-score -2.06
Structure conservation index 0.65
SVM decision value 0.19
SVM RNA-class probability 0.626605
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21920957 104 - 27905053
CACACCAGGAGAA-CACCAGGCACAGAAUCCCAUGGAAUCGACGACAAAGUCGGGAAGAUGCCAGUAAAGUUAGCCACAUCUCCUGGCU------GCCGUUGCUUCUGA-AA
.....((((((((-(....((((.....((((..(....)(((......)))))))...))))......(.((((((.......)))))------).)))).)))))).-.. ( -29.70)
>DroSec_CAF1 35572 104 - 1
CACACCAGGAGAA-CACCAGGCACUGAAUCCCAUGGAAUCGACGACAAAGUCGGGGAGAUGCCAGUAAAGUUAGCCACAUCUCCUGGCU------GCCGUUGCUUCUGA-AA
.....((((((((-(....((((.....((((.......((((......))))))))..))))......(.((((((.......)))))------).)))).)))))).-.. ( -31.51)
>DroSim_CAF1 44792 104 - 1
CACACCAGGAGAA-CACCAGGCACAGAAUCCCAUGGAAUCGACGACAAAGUCGGGGAGAUGCCAGUAAAGUUAGCCACAUCUCCUGGCU------GCCGUUGCUUCUGA-AA
.....((((((((-(....((((.....((((.......((((......))))))))..))))......(.((((((.......)))))------).)))).)))))).-.. ( -31.51)
>DroEre_CAF1 36966 100 - 1
CACACCAGGAGGA------AGCACAGAAUCCCAUGGAAUCGACGACAAAGUCGGGAAGAUGCCACUAAAGUUAGCCACAUCUCCUGGCU------GCCGUUGCUUCUGAAAA
..........(((------(((...((.(((...))).))((((....((((((((.((((...(((....)))...))))))))))))------..))))))))))..... ( -30.20)
>DroYak_CAF1 36599 103 - 1
CACACCAGAAGCGUCUC--CACACAGAAUCCCAUGGAAUCGACGACAAAGUCGGGGAGAUGCCAGUAAAGUUAGCCACAUCUCCUGGCU------GCCGUUGCUUCUGA-AA
.....((((((((((((--(........(((...))).(((((......)))))))))))))..((((.(.((((((.......)))))------).).))))))))).-.. ( -35.50)
>DroPer_CAF1 40331 98 - 1
CACACCACCAGCACCAG--CACCA-----CCAACAA------CAACAACGUUGCGGAGAUGCCAACAGAGUUAGGCACAUCUCCUGGCUGCUGCUGCCGUUGCUUCUGA-AA
.....((..((((.(((--((.((-----(((.(((------(......)))).((((((((((((...))).))))..)))))))).)).)))))....))))..)).-.. ( -29.50)
>consensus
CACACCAGGAGAA_CAC__GGCACAGAAUCCCAUGGAAUCGACGACAAAGUCGGGGAGAUGCCAGUAAAGUUAGCCACAUCUCCUGGCU______GCCGUUGCUUCUGA_AA
.....((((((..............((.((.....)).))..((((.......((((((((................))))))))(((.......))))))))))))).... (-20.48 = -21.36 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:48 2006