Locus 8155

Sequence ID 3R_DroMel_CAF1
Location 21,920,189 – 21,920,279
Length 90
Max. P 0.722823
window13112

overview

Window 2

Location 21,920,189 – 21,920,279
Length 90
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.89
Mean single sequence MFE -16.60
Consensus MFE -10.84
Energy contribution -10.45
Covariance contribution -0.39
Combinations/Pair 1.12
Mean z-score -1.51
Structure conservation index 0.65
SVM decision value 0.40
SVM RNA-class probability 0.722823
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21920189 90 + 27905053
CGCCAGGUUUUCUUCGUUUUAAUUAGUGCCAUUUAUUAUUUAGAGCAUAUUGAUAUAGUUUUCGUUGUUUAACGGUUG-U---UUGUUUC----AGUG----------------------
...............(((((((.(((((.....))))).))))))).((((((.((((...(((((....)))))...-.---)))).))----))))---------------------- ( -14.60)
>DroVir_CAF1 40101 84 + 1
-------AUUUCUUGGCUUUAAUUAGUGUUAUUUAUUAUUUAAAGCAUAUUGAUAUAGUUUUCGUUGUUUAACGGUUG-U---UUGUUUC----GGUUU---------------------
-------........(((((((.(((((.....))))).)))))))..(((((.((((...(((((....)))))...-.---)))).))----)))..--------------------- ( -15.70)
>DroWil_CAF1 45580 91 + 1
-------UUUUCUUGGUUUUAAUUAGUGUAAUUUAUUAUUUAGAGCAUAUUGAUAUAGUUUUCGUUGUUUAACGGUUCGGCCGUUGCUGCCGAAGGUG----------------------
-------........(((((((.(((((.....))))).)))))))...........(..((((..((.((((((.....))))))..))))))..).---------------------- ( -18.10)
>DroMoj_CAF1 43782 86 + 1
-----CGAUUUCUUGGCUUUAAUUAGUGUUAUCUAUUAUUUAGAGCAUAUUGAUAUAGUUUUCGUUGUUUAACGGUAG-U---UUGUUUC----GGUUU---------------------
-----..........(((((((.(((((.....))))).)))))))..(((((.((((...(((((....)))))...-.---)))).))----)))..--------------------- ( -15.00)
>DroAna_CAF1 36386 112 + 1
CGCCAAGUUUUCUUCGCUUUAAUUAGUGUCAUUUAUUAUUUAGAGCAUAUUGAUAUAGUUUUCGUUGUUUAACGGUUG-U---UUGUUUC----AGUUUAUGUUUGCAUUUGUGUGAUUU
((((((((.......(((((((.(((((.....))))).)))))))..(((((.((((...(((((....)))))...-.---)))).))----)))..........))))).))).... ( -21.70)
>DroPer_CAF1 38974 91 + 1
CACCAAGUUUUCUUCGUUUUAAUUAGUGUCAUUUAUUAUUUAGAGCAUAUUGAUAUAGUUUUCGUUGUUUAACGGUUG-U---UUGUUUC----AGUUU---------------------
...............(((((((.(((((.....))))).)))))))..(((((.((((...(((((....)))))...-.---)))).))----)))..--------------------- ( -14.50)
>consensus
______GUUUUCUUCGCUUUAAUUAGUGUCAUUUAUUAUUUAGAGCAUAUUGAUAUAGUUUUCGUUGUUUAACGGUUG_U___UUGUUUC____AGUUU_____________________
...............(((((((.(((((.....))))).)))))))...............(((((....)))))............................................. (-10.84 = -10.45 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:47 2006