| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,918,869 – 21,918,969 |
| Length | 100 |
| Max. P | 0.500000 |
| Location | 21,918,869 – 21,918,969 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 76.34 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21918869 100 - 27905053 AAUCAGCAGAAAGAAACGGGUUUAGUACCCGGUAGCAACAAAUCAUAAAAAUAUGAAAAAUUAUGCGGCGGCGUCGGAGGAGA---UUCGCAAC------UCUCAA-CUC--- .....(((........(((((.....)))))...........(((((....))))).......))).((((.(((......))---)))))...------......-...--- ( -20.10) >DroPse_CAF1 37495 90 - 1 -------AAAAAGAAACGGGUUUAGUACCCGGUAGCAACAAAUCAUAAAAAUAUGAAAAAUUAUGCGGCGGCGUCGGUGGCAA---C-AGCAAC------A--GCA-CCA--- -------..........((((.....))))(((.((......(((((....))))).......(((.((.((....)).))..---.-.)))..------.--)))-)).--- ( -22.60) >DroGri_CAF1 36662 75 - 1 ------------CAAACGGGUUUACUACCCGGUAGCAACAAAUCAUAAAAAUAUGAAAAAUUAUGCGGCGGCGGCGGAGGAGA---C-GUC---------------------- ------------....(((((.....)))))((.(((.....(((((....))))).......))).))...((((.......---)-)))---------------------- ( -16.50) >DroEre_CAF1 34861 100 - 1 AAUCAGCAAAAAGAAACGGGUUUAGUACCCGGUAGCAACAAAUCAUAAAAAUAUGAAAAAUUAUGCGGCGGCGUCGGAGGAGA---UUCGCAAC------UCUCAA-CUC--- .....(((........(((((.....)))))...........(((((....))))).......))).((((.(((......))---)))))...------......-...--- ( -20.10) >DroWil_CAF1 43833 107 - 1 AAACAA-AAACAAAAACGGGUUUAGUACCCGGUAGCAACAAAUCAUAAAAAUAUGAAAAAUUAUGCGGCGGCGUCGGUGGCGG---U-GGCAAAUGACGAUCUCAA-GAUGCU ......-.........(((((.....)))))((.(((.....(((((....))))).......))).))((((((..(((.((---(-.((....).).)))))).-)))))) ( -24.20) >DroAna_CAF1 34898 102 - 1 -AU---CAAAAGGAAACGGGUUUAGUACCCGGUAGCAACAAAUCAUAAAAAUAUGAAAAAUUAUGCGGCGGCGUCGGUGGCGAAGCAUCUCAGC------UCUCCAGCUC-CA -..---.....(((...((((.....))))((.(((......(((((....)))))......((((.((.((....)).))...))))....))------)..))...))-). ( -25.30) >consensus _AU____AAAAAGAAACGGGUUUAGUACCCGGUAGCAACAAAUCAUAAAAAUAUGAAAAAUUAUGCGGCGGCGUCGGAGGAGA___U_CGCAAC______UCUCAA_CUC___ ................(((((.....)))))((.(((.....(((((....))))).......))).))............................................ (-13.30 = -13.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:47 2006