| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,915,899 – 21,915,989 |
| Length | 90 |
| Max. P | 0.982411 |
| Location | 21,915,899 – 21,915,989 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 74.65 |
| Mean single sequence MFE | -22.36 |
| Consensus MFE | -8.50 |
| Energy contribution | -10.83 |
| Covariance contribution | 2.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.38 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21915899 90 + 27905053 CCUCCUGUUGAUUGGUAUCUGGC-----AAAGACCAACUUUGGUCAUUCCACCCCAGCUAAUCCACACAGAUCCUCCCACACAUUCAGUUGGGAA ....((((.(((((((...(((.-----((.(((((....))))).))))).....)))))))...))))....(((((.((.....))))))). ( -24.90) >DroSec_CAF1 30581 90 + 1 CCCCCUGUUGAUUGGUAUCUGGC-----GAAGACCAACUUUGGUCAUUCCACCCCAGCUAAUCCACACAGAUCCUCCCCCACAUCCAGUUGGGAA ....((((.((((((...((((.-----((((((((....))))).)))....))))))))))...))))......(((.((.....)).))).. ( -24.20) >DroSim_CAF1 39672 90 + 1 CCCCCCGUUGAUUGGUAUCUGGC-----GAAGACCAACUUUGGUCAUUCCACCCCAGCUAAUCCACACAGAUCCUCCCACACAUCCAGUUGGGAA ......((.((((((...((((.-----((((((((....))))).)))....)))))))))).))........(((((.((.....))))))). ( -24.60) >DroEre_CAF1 31876 89 + 1 CC-CCUGUUGAUUGGUAUCUGGU-----GAAGACCAACUUUGGUCAUUUCGCCCCGGCUAACCCACACAGAUCCUCCCACACAUCCAGUUGGUAA ..-..((..((((((.(((((((-----(..(((((....))))).....((....)).....))).)))))............))))))..)). ( -22.62) >DroYak_CAF1 31352 80 + 1 CCCCCUGUUGAUUGGUAUCUGGUAGCUUGAUGACCAACUUUGGUCAU---------------CCACACAGAUCCUCCCACACAUCCAGUUGGUAA .....((..((((((.(((((((.....((((((((....)))))))---------------).)).)))))............))))))..)). ( -20.52) >DroPer_CAF1 34092 72 + 1 ------CACGAUCAAUAACUUUG-----AAAUACCAUCUUUGGG------------GCAGUCCCACUCCCAUCCUCCCACACGCCCAUGUGGGAA ------.....((((.....)))-----).............((------------(.((.....)))))....(((((((......))))))). ( -17.30) >consensus CCCCCUGUUGAUUGGUAUCUGGC_____GAAGACCAACUUUGGUCAUUCCACCCCAGCUAAUCCACACAGAUCCUCCCACACAUCCAGUUGGGAA .............((.(((((..........(((((....)))))...........(........).)))))))(((((.((.....))))))). ( -8.50 = -10.83 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:44 2006