Locus 8151

Sequence ID 3R_DroMel_CAF1
Location 21,915,149 – 21,915,243
Length 94
Max. P 0.600605
window13107

overview

Window 7

Location 21,915,149 – 21,915,243
Length 94
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 81.20
Mean single sequence MFE -27.47
Consensus MFE -19.39
Energy contribution -19.25
Covariance contribution -0.14
Combinations/Pair 1.04
Mean z-score -1.38
Structure conservation index 0.71
SVM decision value 0.14
SVM RNA-class probability 0.600605
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21915149 94 + 27905053
----------UAUGAUAAAUAUUGGUAAUAUUGUUGUAAUAACAGCAAGUGCCCGCGCCUUUUUGGCUUUCCUCGU--------------UCGA-CUGUCUGCCAUUUUGCCGCUGUUA
----------..(((((......((((...(((((((....))))))).)))).(((.(....((((.....((..--------------..))-......))))....).)))))))) ( -21.10)
>DroPse_CAF1 33355 111 + 1
-CGAGAGAGCUUUGAUAAAUAUUGGUAAUAUUGUUGUAAUAACAGCAAGUGCCCGCGCCUUUUUGGCUUUC-UCGUCGACC-----GUUGUCGA-CUGUCUGCCAUUUUGCCGCUGUUA
-.(((((((((..((........((((...(((((((....))))))).)))).......))..)))))))-))((((((.-----...)))))-)....................... ( -33.66)
>DroWil_CAF1 38332 111 + 1
------GACUUUUGAUAAAUAUUGGUAAUAUUGUUGUAAUAACAGCAAGUGCCCGCGCCUUUAUGGCUUUCUCAG-AGACUUUAGAGAUGUCGA-UUGUCUGCCAUUUUGCCGCUGUUA
------(((..((((((......((((...(((((((....))))))).))))...(((.....)))..((((..-........))))))))))-..)))................... ( -26.60)
>DroMoj_CAF1 37050 94 + 1
-----------UUGAUAAAUAUUGGUAAUAUUGUUGUAAUAACAGCAAGUGCCCGCGCCUUUCUGGCUUUCACAGA--------------CGGGCCAGACUGCCAUUUUGCCGCUGUUA
-----------............((((...(((((((....))))))).))))...((((.((((.......))))--------------.))))(((.(.((......)).))))... ( -25.40)
>DroAna_CAF1 31114 99 + 1
GUGCGAGAGCUUUAAUAAAUAUUGGUAAUAUUGUUGUAAUAACAGCAAGUGCCCGCGCCUUUUUGGCUUUC-------------------UCGA-CUGUCUGCCAUUUUGCCGCUGUUA
..((....))..(((((......((((...(((((((....))))))).)))).(((.(....((((...(-------------------....-..)...))))....).)))))))) ( -24.40)
>DroPer_CAF1 33439 111 + 1
-CGAGAGAGCUUUGAUAAAUAUUGGUAAUAUUGUUGUAAUAACAGCAAGUGCCCGCGCCUUUUUGGCUUUC-UCGUCGACC-----GUUGUCGA-CUGUCUGCCAUUUUGCCGCUGUUA
-.(((((((((..((........((((...(((((((....))))))).)))).......))..)))))))-))((((((.-----...)))))-)....................... ( -33.66)
>consensus
______GAGCUUUGAUAAAUAUUGGUAAUAUUGUUGUAAUAACAGCAAGUGCCCGCGCCUUUUUGGCUUUC_UCGU______________UCGA_CUGUCUGCCAUUUUGCCGCUGUUA
............(((((......((((...(((((((....))))))).)))).(((.(....((((..................................))))....).)))))))) (-19.39 = -19.25 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:43 2006