Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,913,752 – 21,913,842 |
Length | 90 |
Max. P | 0.699785 |
Location | 21,913,752 – 21,913,842 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 82.69 |
Mean single sequence MFE | -15.31 |
Consensus MFE | -12.00 |
Energy contribution | -11.75 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.06 |
Mean z-score | -1.69 |
Structure conservation index | 0.78 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21913752 90 + 27905053 ----AGUCACAAUCA------------CAGCCGCAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAGCGUGCAGCCAAUUAUCAGCAUGCAUAUAUGCAUU ----(((((......------------(((.............)))....))))).((((((((.......((((((............))))))..)))))))). ( -15.82) >DroPse_CAF1 31346 100 + 1 ----GCCCCCAAUCUUGGCCACAAUCUCCAUCUCCAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAACGUGCAGCCAAUUAUCAGCAUGCAU--AUGCAUC ----(((.........))).........................((((.((((....((((..((.....))..)))).....)))).))))(((..--..))).. ( -13.20) >DroEre_CAF1 29687 90 + 1 ----AGUCACAAUCA------------CAGCCGCAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAGCGUGCAGCCAAUUAUCAGCAUGCAUAUAUGCAUU ----(((((......------------(((.............)))....))))).((((((((.......((((((............))))))..)))))))). ( -15.82) >DroYak_CAF1 29186 98 + 1 ----AGUCACAAUCA----CAGAGUCACAGCCGCAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAGCGUGCAGCCAAUUAUCAGCAUGCAUAUAUGCAUU ----...........----..((((((.(((..............)))..))))))((((((((.......((((((............))))))..)))))))). ( -22.54) >DroAna_CAF1 29687 92 + 1 AUACAAUCACAUUCA------------CAAUCACAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAACGUGCAGCCAAUUAUCAGCAUGCAU--AUGCAUC ...............------------.................((((.((((....((((..((.....))..)))).....)))).))))(((..--..))).. ( -11.30) >DroPer_CAF1 31457 100 + 1 ----GCCCCCAAUCUUGGCCACAAUCUCCAUCUCCAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAACGUGCAGCCAAUUAUCAGCAUGCAU--AUGCAUC ----(((.........))).........................((((.((((....((((..((.....))..)))).....)))).))))(((..--..))).. ( -13.20) >consensus ____AGUCACAAUCA____________CAACCGCAAUCUCCAUCUGCUCAUGACUCAUGCAUAUUCAAUCAACGUGCAGCCAAUUAUCAGCAUGCAU__AUGCAUC ............................................((((.((((....((((..((.....))..)))).....)))).))))((((....)))).. (-12.00 = -11.75 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:42 2006