| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,782,235 – 2,782,330 |
| Length | 95 |
| Max. P | 0.631561 |
| Location | 2,782,235 – 2,782,330 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.88 |
| Mean single sequence MFE | -28.12 |
| Consensus MFE | -18.96 |
| Energy contribution | -19.05 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2782235 95 + 27905053 CCCUCUUAUUGUUGCUUUGCGGCUGCUCUUGUUGUAAAUGCAACAUCGAUGAAUGCGAAAUGAGGGAAUCGGGCGGGCGAAAG--------------AAAGGGGGGACA (((((((..((((((((((((((.......)))))))).))))))(((.....(((....(((.....))).)))..)))...--------------.))))))).... ( -29.90) >DroSec_CAF1 57812 92 + 1 CCCUCUUAUUGUUGUUUUGCGGCUGCUCUUGUUGUAAAUGCAACAUCGAUGAAUGCGAAAUGAGGGAAUCGGGCGGGCGAAAG--------------AGAGGGG---CA (((((((..((((((((((((((.......)))))))).))))))(((.....(((....(((.....))).)))..)))..)--------------)))))).---.. ( -28.80) >DroSim_CAF1 60642 91 + 1 CCCUCUUAUUGUUGUUUUGCGGCUGCUCUUGUUGUAAAUGCAACAUCGAUGAAUGCGAAAUGAGGGAAUCGGGCG-GCGAAAG--------------AGAGGGG---CA (((((((..(((......)))(((((((.((((((....))))))(((.......)))............)))))-))....)--------------)))))).---.. ( -29.80) >DroEre_CAF1 58949 106 + 1 CCCUCUUAUUGUUGUUUUGCGGCUGCUCUUGUUGUAAAUGCAACAUCGAUGAAUGCGAAAUGAGGGAAUCGGGAGGGCGAAAGAGAGCGAGGGAGAGAGAGAGG---CA .((((((....((.((((((..(((((((((((((....))))).(((((.....(.....).....)))))))))))...))...)))))).))...))))))---.. ( -28.60) >DroYak_CAF1 58341 100 + 1 CCUUCUUAUUGUUGUAUUGCGGCUGCUUUUGUUGUAAAUACAACAUCGAUGAAUGCGAAAUGAGGGAAUCGGAAGAGCGAAAGGGC------GAAAGGGAGGGG---CA (((((((..((((((((((((((.......))))).)))))))))........(((............((....)).(....).))------)...))))))).---.. ( -27.70) >DroAna_CAF1 54195 82 + 1 UUCAGCCGCUGUCG--UUGCGGCUGCUCUUGUUGUAACUGCAACAUCGAUGAAUGCGAAAUGAGAAAA--------GUGAAAG--------------AGCCGGU---CG ...((((((.....--..))))))(((((((((((....))))).(((.......)))..........--------....)))--------------)))....---.. ( -23.90) >consensus CCCUCUUAUUGUUGUUUUGCGGCUGCUCUUGUUGUAAAUGCAACAUCGAUGAAUGCGAAAUGAGGGAAUCGGGCGGGCGAAAG______________AGAGGGG___CA (((((....((((((((((((((.......)))))))).))))))(((.......)))...)))))........................................... (-18.96 = -19.05 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:50 2006