Locus 8149

Sequence ID 3R_DroMel_CAF1
Location 21,908,166 – 21,908,265
Length 99
Max. P 0.513839
window13105

overview

Window 5

Location 21,908,166 – 21,908,265
Length 99
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 76.27
Mean single sequence MFE -18.81
Consensus MFE -11.32
Energy contribution -10.92
Covariance contribution -0.40
Combinations/Pair 1.33
Mean z-score -1.57
Structure conservation index 0.60
SVM decision value -0.04
SVM RNA-class probability 0.513839
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21908166 99 - 27905053
CCAUAAUUGUCAACAAUAAUAAAAGCUCAUGACAUAAACGGCCAGCAGGCAAC---UGGCCACAAACAUCGAAGCUCCACAAAAC----GGCGAUGAGCAUGCGAA
.....((((....)))).......((((((.........((((((.......)---)))))............(((.........----))).))))))....... ( -22.40)
>DroPse_CAF1 24726 101 - 1
CCAUAAUUGUCAACUAUAAUAAAAGCUCAUGACAUAAACGGCCAACAGGCAACAAUUGGCAUCACACA-----GACACACAAAGCCAGCCAAGAUGACCGUGCGAA
.......(((((.................)))))...((((.((.(.(....)..(((((........-----..............)))))).)).))))..... ( -14.28)
>DroEre_CAF1 24194 80 - 1
CCAUAAUUGUCAACAAUAAUAAAAGCUCAUGACAAAAACGGCCAGCAGGCAAC---UGGCC-------------------AAAAC----GGCGAUGAGCAUGCCAA
.....((((....)))).......((((((..(......((((((.......)---)))))-------------------.....----.)..))))))....... ( -20.50)
>DroAna_CAF1 23923 99 - 1
CCAUAAUUGUCAACAAUAAUAAAAGCUCCUGACAUAAACGGCCGGCAGGCAAU---UGGCAAGCAACAUCGAACCCACACAAAAG----GCCGAGGAGCGUGCGAA
.(((.((((....)))).......((((((........(((((.((..((...---..))..))......(....)........)----))))))))))))).... ( -22.60)
>DroPer_CAF1 24725 101 - 1
CCAUAAUUGUCAACUAUAAUAAAAGCUUAUGACAUAAACGGCCAACAGGCAACAAUUGGCAUCACACA-----GACACACAAAGCCAGCCAAGAUGACCGUGCGAA
.......(((((.................)))))...((((.((.(.(....)..(((((........-----..............)))))).)).))))..... ( -14.28)
>consensus
CCAUAAUUGUCAACAAUAAUAAAAGCUCAUGACAUAAACGGCCAGCAGGCAAC___UGGCAACAAACA_____GACACACAAAAC____GACGAUGAGCGUGCGAA
........................((((((..(......)((((...(....)...)))).................................))))))....... (-11.32 = -10.92 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:41 2006