| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,903,164 – 21,903,255 |
| Length | 91 |
| Max. P | 0.837171 |
| Location | 21,903,164 – 21,903,255 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.82 |
| Mean single sequence MFE | -21.87 |
| Consensus MFE | -15.14 |
| Energy contribution | -14.83 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21903164 91 + 27905053 UUAAAAAA--------CAAUACACACUUAAUACUAACCUCUAUCCUCAACCGGUUCGCCGGCAUCCCCAUGGCCCGUGGCCG------------------UUGGUAUCGGUAUCGAA--- ........--------........(((..((((((((............((((....)))).........((((...)))))------------------))))))).)))......--- ( -20.60) >DroSec_CAF1 17968 91 + 1 UUAAAAAA--------CAAUACACACUUAAUACUAACCUCUAUCCUCAACCGGUUCGCCGGCAUCCCCAUGGCCCGUGGCCG------------------UUGGUAUCGGUAUCGAA--- ........--------........(((..((((((((............((((....)))).........((((...)))))------------------))))))).)))......--- ( -20.60) >DroEre_CAF1 19321 97 + 1 UUAGAAAAAA--AAAGCAAUACACACUUAAUACUAACCUCUAUCCUCAACCGGUUCGCCGGCAUCCCCAUGGCCCGUGGCCG------------------UUGGUAUCGGUAUCGAA--- ..........--............(((..((((((((............((((....)))).........((((...)))))------------------))))))).)))......--- ( -20.60) >DroWil_CAF1 23536 75 + 1 ---------------------------CUGUACUAACCUCUAUCUUCAACCGGUUCGCUGGCAUCUGUAUGGCCCGUGGCAA------------------GUGGUAAAGCCACUGAAGUC ---------------------------................((((.....((.(((.(((.........))).))))).(------------------((((.....))))))))).. ( -17.10) >DroYak_CAF1 18530 99 + 1 UUAAAAAAAAACAAAUCAAUACACACUUAAUACUAACCUCUAUCCUCAACCGGUUCGCCGGCAUCCCCAUGGCCCGUGGCCG------------------UUGGUAUCGGUAUCGAA--- ...............((.((((.......((((((((............((((....)))).........((((...)))))------------------)))))))..)))).)).--- ( -21.80) >DroAna_CAF1 18886 112 + 1 UUAAAAAGAA--A---AAAUGAGAAAUAUGUACUAACCUCUAUCCUCAACCGGUUCGCUGGCAUCCCCAUGGCCCGUGGCCAGCGGUAUAGGUAUAGGUAUGGGUAUUGGUAUCGAA--- ..........--.---.............(((((((..((((((((..(((...((((((((..((....))......))))))))....)))..))).)))))..)))))))....--- ( -30.50) >consensus UUAAAAAA________CAAUACACACUUAAUACUAACCUCUAUCCUCAACCGGUUCGCCGGCAUCCCCAUGGCCCGUGGCCG__________________UUGGUAUCGGUAUCGAA___ .............................(((((.(((...........((((....))))........(((((...)))))....................)))...)))))....... (-15.14 = -14.83 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:38 2006