| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,898,920 – 21,899,015 |
| Length | 95 |
| Max. P | 0.831732 |
| Location | 21,898,920 – 21,899,015 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.48 |
| Mean single sequence MFE | -14.97 |
| Consensus MFE | -9.60 |
| Energy contribution | -9.22 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.831732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21898920 95 - 27905053 -C-------GAACAGC-AAACAUAAUAAUUCGUCUAUAAUUUAUACACAAUUGUGGGUAAAAUGUGUACAAGCAUAAUUUACACAUAAACAAGCCACAAAUCCA------- -.-------.....((-................((((((((.......))))))))(((((.(((((....))))).)))))..........))..........------- ( -12.90) >DroVir_CAF1 15205 108 - 1 UG--GGGAUAAGAAAA-AAACAUAAUAAUUCGUCUAUAAUUUAUACACAAUUGUAAAUAAAAUGUGUACAAGCAUAAUUUACACAUAAACAAGACGAUGCGCUACAAAAAA ..--............-............((((((...(((((((......)))))))...(((((((.((......))))))))).....)))))).............. ( -14.80) >DroPse_CAF1 14183 103 - 1 UCUGCAAAAACACAAC-AAACAUAAUAAUUCGUCUAUAAUUUAUACACAAUUGUGGGUAAAAUGUGUACAAGCAUAAUUUACACAUAAACAAGGCAGAAAGCCA------- (((((...........-................((((((((.......))))))))(((((.(((((....))))).)))))...........)))))......------- ( -18.60) >DroWil_CAF1 17099 106 - 1 ACUAC-----AACAACAAAACAUAAUAAUUCGUCUAUAAUUUAUACACAAUUGUAAAUAAAAUGUGUACAAGCAUAAUUUACACAUAAACAAGACGAUGCGCCACAAGAAG .....-----...................((((((...(((((((......)))))))...(((((((.((......))))))))).....)))))).............. ( -14.80) >DroAna_CAF1 13641 95 - 1 -C-------CGACAAC-AAACACAAUAAUUCGUCUAUAAUUUAUACACAAUUGUCAGUAAAAUGUGUACGAGCAUAAUUUACACAUAAACAAGCCAGAUAGCCG------- -.-------.(((((.-.........((((.......)))).........))))).(((((.(((((....))))).)))))......................------- ( -9.61) >DroPer_CAF1 14086 103 - 1 UCUGCAAAAACACAAC-AAACAUAAUAAUUCGUCUAUAAUUUAUACACAUUUGUGGGUAAAAUGUGUACAAGCAUAAUUUACACAUAAACAAGGCAGAAAGCCA------- (((((...........-..............((.((((...)))).)).((((((.(((((.(((((....))))).))))).))))))....)))))......------- ( -19.10) >consensus UC__C____AAACAAC_AAACAUAAUAAUUCGUCUAUAAUUUAUACACAAUUGUGAGUAAAAUGUGUACAAGCAUAAUUUACACAUAAACAAGACAGAAAGCCA_______ ...............................((((...(((((((......)))))))...(((((((.((......))))))))).....))))................ ( -9.60 = -9.22 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:37 2006