Locus 8145

Sequence ID 3R_DroMel_CAF1
Location 21,897,399 – 21,897,489
Length 90
Max. P 0.996216
window13100

overview

Window 0

Location 21,897,399 – 21,897,489
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 92.00
Mean single sequence MFE -16.50
Consensus MFE -13.94
Energy contribution -14.78
Covariance contribution 0.84
Combinations/Pair 1.05
Mean z-score -2.38
Structure conservation index 0.84
SVM decision value 2.67
SVM RNA-class probability 0.996216
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21897399 90 - 27905053
AUCACCAAAAACAUAUUUUCUUUUCUUUCUGUGUAGCUGAAGCUGCAAUUCUUUCCACAGUCUACUAAGCACUUUGAACUCGCAGAAAUU
.........................((((((((((((....))))).........((.(((((....)).))).)).....))))))).. ( -15.50)
>DroSec_CAF1 11965 90 - 1
ACCACCAAAAACCUAUUUUCUUUUCUUUCUGUGUAGCUGAAGCUGCAAUUCUUUCCAGAGACUACUAAGCACUUUGAACUCGCAGAAAUU
.........................((((((((((((....))))).........(((((.((....))..))))).....))))))).. ( -16.20)
>DroSim_CAF1 12524 90 - 1
ACCACCAAAAACAUUUUUCCUUUUCUUUCUGUGUAGCUGAAGCUGCAAUUCUUUCCAGAGACUACUAAGCACUUUGAACUCGCAGAAAUU
.........................((((((((((((....))))).........(((((.((....))..))))).....))))))).. ( -16.20)
>DroEre_CAF1 13361 89 - 1
AUCACCAA-AACAUAUAUUCUCUUCUUACUGUGUAGCUUAAGCUGCCAUUCUUUUCGGAGUCUACUAAGCACUUUGAACUCGCAGAAAUU
........-...................(((((((((....))))).......((((((((((....)).))))))))...))))..... ( -16.70)
>DroYak_CAF1 12565 89 - 1
AUCACCAAAAACAUUUAUUCUUUUCUUUCUGUGUAGCUUAA-CUGCAAUUCUUUUCAGAGUCUACUAAGCACUUUGAACUCGCAGAAAUU
.........................((((((((..((....-..)).......((((((((((....)).))))))))..)))))))).. ( -17.90)
>consensus
AUCACCAAAAACAUAUUUUCUUUUCUUUCUGUGUAGCUGAAGCUGCAAUUCUUUCCAGAGUCUACUAAGCACUUUGAACUCGCAGAAAUU
.........................((((((((((((....))))).........((((((((....)).)))))).....))))))).. (-13.94 = -14.78 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:36 2006