| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,886,458 – 21,886,563 |
| Length | 105 |
| Max. P | 0.974102 |
| Location | 21,886,458 – 21,886,563 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 88.55 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -21.24 |
| Energy contribution | -20.68 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.974102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21886458 105 + 27905053 GUUUGCACCAAACCUAGGGUGCUACUGUAUUGGAGGCACAAAUAA--AUUGUCAGGCAUAUCCAAUACCAAAAGAGUUAGGGAAAGCUUGCCCACCAAUAUAUUUAA ((..(((((........))))).))((((((((.(((((((....--.)))).((((...(((...(((....).))...)))..)))))))..))))))))..... ( -27.00) >DroSec_CAF1 1158 104 + 1 GCUUGCACCAAACCUAGGGUGCUACUGUAUUGGAGGCACAAACAA--AAUGUGAGGCAUAUCCAAUACCAA-AUAGUUAGGGAAAGCUUGCCCACCAAUAUAUUUAA ....(((((........)))))...((((((((.((((((.....--..))))((((...(((...((...-...))...)))..))))..)).))))))))..... ( -26.70) >DroSim_CAF1 1169 104 + 1 GCUUGCACCAAACCUUGGGUGCUACUGUAUUGGAGGCACAAACAA--AAUGUGAGGCAUAUCCAAUACCAA-AUAGUUAGGGAAAGCUUGCCCACCAAUAUAUUUAA ....(((((........)))))...((((((((.((((((.....--..))))((((...(((...((...-...))...)))..))))..)).))))))))..... ( -26.70) >DroEre_CAF1 1194 104 + 1 GCUUGCACCAAACCUAGGGUGCUACUGUAUUGGAGGCACAAAUAU--AAUGUCA-GCAAAUCAAAUACUAAAAAAAAUAGGGAAAGCUUAUCCACCAAUAUAUGCAA ((..(((((........)))))...((((((((.((((.......--..)))).-.........................(((.......))).)))))))).)).. ( -21.50) >DroYak_CAF1 1178 107 + 1 GCUUGCACCGAACCUAGGGUGCUACUGUAUUGGAGGCACACAUACAAAAUGUCAGGCAAAUCAAGUAGCAAAAAAGUUAGGGAAAGCUUACCCACCAGUAUAUUCAA ....(((((........)))))...((((((((..((..((((.....))))...))........((((......))))(((........))).))))))))..... ( -24.60) >consensus GCUUGCACCAAACCUAGGGUGCUACUGUAUUGGAGGCACAAAUAA__AAUGUCAGGCAUAUCCAAUACCAAAAAAGUUAGGGAAAGCUUGCCCACCAAUAUAUUUAA ....(((((........)))))...((((((((..((....(((.....)))...))......................(((........))).))))))))..... (-21.24 = -20.68 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:34 2006