| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,882,407 – 21,882,524 |
| Length | 117 |
| Max. P | 0.744179 |
| Location | 21,882,407 – 21,882,524 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.59 |
| Mean single sequence MFE | -39.82 |
| Consensus MFE | -21.22 |
| Energy contribution | -21.42 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21882407 117 + 27905053 AAAGAAUUUUAGAGUGAUUGUAGAGAAGAUCUUCAAUCACUGGCAGGAUCUCCGGCUGGCGGUGGAGCAUGGCAUGGGCGGACGCAAUGGCCAACAGGUUGU-UGCUCG-UAUACCC-UG ............((((((((.(((.....))).))))))))..((((...((((.(((((.(((...))).)).))).)))).((((..(((....)))..)-)))...-.....))-)) ( -41.60) >DroVir_CAF1 68850 117 + 1 AAAGAAUUUUCGCUUAAUUGUUGAAAGAAUCUUUAACAAUUGGCAAAAUCUGCGCUUGGCCGUCGAGCAUGGGAUGGGCGGACGCAAUGGCCAGCAGGUGGG-AGCACA-UCG-CAUUCU ..((((((..(((((((((((((((......))))))))))(((...((.((((..((.(((((........))))).))..)))))).)))...)))))..-)((...-..)-)))))) ( -37.00) >DroPse_CAF1 72073 117 + 1 AAAGAAUUUUCGACUAAUUGUUGAGAAGAUCUUCAACAAUUGGCAGAACUUGAGGCUCGCCGUUGAGCAUGGCAUGGGCGGACGCAAUGGCCAGCAGGUGAG-CCCACU-UCUACAU-GA ..((((..(((..((((((((((((......))))))))))))..)))..((.((((((((.....((.((((....((....))....)))))).))))))-)))).)-)))....-.. ( -44.30) >DroGri_CAF1 62062 116 + 1 GAAGAAUUUUCGCUUAAUUGUUGAGAGAAUCUUCAAUAAUUGGCAAAAUUUGCGGCUGGCCGUCGAGCAUGGCAUGGGCGGACGCAAUGGUCAGCAGGUGAG-UACAUU-UGC-CAC-UA (((((...(((.((((.....)))).))))))))......((((((((((..(.((((((((((......)))....((....))...)))))))..)..))-)...))-)))-)).-.. ( -36.80) >DroAna_CAF1 63739 119 + 1 AAAGAAUUUUCGCCUGAUUGUUGAAAAGAUUUUCAACCACUGGCAGAACCUGCGGCUGGCCGUGGAGCAUGGCAUGGGUGGACGCAAUGGCCAACAGGUGACAUCCUCCUUUCACUC-AA .........(((((((...(((((((....)))))))...((((......((((.(((.(((((........))))).))).))))...)))).)))))))................-.. ( -35.90) >DroPer_CAF1 72844 117 + 1 AAAGAAUUUUCGACUAAUUGUUGAGAAGAUCUUCAACAAUUGGCAGAACUUGAGGCUCGCCGUGGAGCACGGCAUGGGCGGACGCAAUGGCCAGCAGGUGAG-CCCACU-UCUACAU-UA ..((((..(((..((((((((((((......))))))))))))..)))..((.(((((((((((...)))(((....((....))....)))....))))))-)))).)-)))....-.. ( -43.30) >consensus AAAGAAUUUUCGACUAAUUGUUGAGAAGAUCUUCAACAAUUGGCAGAACCUGCGGCUGGCCGUGGAGCAUGGCAUGGGCGGACGCAAUGGCCAGCAGGUGAG_UCCACU_UCUACAC_UA ...........(.((((((((((((......)))))))))))))...(((((...((((((((...((.(.((....)).)..)).)))))))))))))..................... (-21.22 = -21.42 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:32 2006