| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,862,856 – 21,862,965 |
| Length | 109 |
| Max. P | 0.876354 |
| Location | 21,862,856 – 21,862,965 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 78.05 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -18.55 |
| Energy contribution | -18.88 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.876354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21862856 109 + 27905053 -----CGCAACAAAUAAAC-----AAAACAAACACACAAUGGCCACCAAAUACGAGAUGUCGAAAACCUAUCAGUACCGCAAGGUGAUGAAGCCCUUGCUGGAGCGGAAGCGUCGUGCC -----.(((..........-----..........(((((.(((.........(((....)))........(((.((((....)))).))).))).))).))((((....)).)).))). ( -25.70) >DroVir_CAF1 50096 94 + 1 -------------A----------CAAACAAC-A-ACCAUGGCCACCAAAUACGAGUUAUCAAAGACCUAUCAGUACCGCAAGGUGAUGAAGCCGCUGCUGGAGCGCAAACGUCGCGCA -------------.----------........-.-.(((((((..........((....)).........(((.((((....)))).))).))))....))).((((.......)))). ( -23.00) >DroGri_CAF1 43919 102 + 1 ----------CACAAAAACU----AAAACUAA-G--CCAUGGCAACCAAAUACGAGUUAUCGAAGACUUAUCAGUACCGCAAGGUGAUGAAGCCGCUGCUGGAGCGCAAGCGUCGCGCA ----------..........----....(((.-(--(..((((..........(((((......))))).(((.((((....)))).))).))))..))))).((((.......)))). ( -28.70) >DroEre_CAF1 40179 113 + 1 ACACACACACAAUAUAAAC-----AAAACCAA-ACGAAAUGGCCACCAAAUACGAGAUGUCCAAAACUUAUCAGUACCGCAAGGUGAUGAAGCCUUUGCUGGAGCGGAAGCGUCGUGCC ...................-----....(((.-......)))........(((((....(((........(((.((((....)))).)))(((....))))))((....)).))))).. ( -23.80) >DroYak_CAF1 44030 108 + 1 -----CACACAACAUAAAC-----AAAACCAA-ACACAAUGGCCACCAAAUACGAAAUGUCCAAGACCUAUCAGUACCGCAAGGUGAUGAAGCCUCUGCUGGAGCGGAAGCGUCGUGCC -----..............-----........-.(((..(((.((............)).))).(((...(((.((((....)))).))).((.(((((....))))).)))))))).. ( -25.80) >DroMoj_CAF1 50290 108 + 1 ----------CAAACAGACAUCGCCAAACAAC-GCAACAUGGCCACCAAAUACGAACAAUCAAAGACUUAUCAGUACCGCAAGGUGAUGAAGCCCCUGCUGGAACGCAAGCGUCGUGCA ----------............((...((.((-((.....(((..........((....)).........(((.((((....)))).))).)))..(((......))).)))).)))). ( -22.50) >consensus __________CAAAUAAAC_____AAAACAAA_ACACAAUGGCCACCAAAUACGAGAUAUCAAAGACCUAUCAGUACCGCAAGGUGAUGAAGCCCCUGCUGGAGCGCAAGCGUCGUGCA ........................................(((..........((....)).........(((.((((....)))).))).)))...((((..((....))..)).)). (-18.55 = -18.88 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:31 2006